| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 15 | NC_000015.10:g.38700692G>A |
| GRCh37.p13 chr 15 | NC_000015.9:g.38992893G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.852 | A=0.148 |
| 1000Genomes | American | Sub | 694 | G=0.750 | A=0.250 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.967 | A=0.033 |
| 1000Genomes | Europe | Sub | 1006 | G=0.749 | A=0.251 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.831 | A=0.169 |
| 1000Genomes | South Asian | Sub | 978 | G=0.800 | A=0.200 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.697 | A=0.303 |
| The Genome Aggregation Database | African | Sub | 8680 | G=0.828 | A=0.172 |
| The Genome Aggregation Database | American | Sub | 838 | G=0.760 | A=0.240 |
| The Genome Aggregation Database | East Asian | Sub | 1620 | G=0.972 | A=0.028 |
| The Genome Aggregation Database | Europe | Sub | 18430 | G=0.722 | A=0.277 |
| The Genome Aggregation Database | Global | Study-wide | 29870 | G=0.768 | A=0.232 |
| The Genome Aggregation Database | Other | Sub | 302 | G=0.740 | A=0.260 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.766 | A=0.233 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.699 | A=0.301 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 23089632 | A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53. | Wang JC | Mol Psychiatry |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs12901215 | 4.38E-07 | alcohol dependence | 23089632 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value |
|---|---|---|---|---|
| cg21039679 | chr15:38989738 | C15orf53 | -0.0256202962864761 | 6.4824e-14 |
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr15 | 38960652 | 38961725 | E068 | -31168 |
| chr15 | 38960652 | 38961725 | E069 | -31168 |
| chr15 | 38960652 | 38961725 | E070 | -31168 |
| chr15 | 39000028 | 39001434 | E081 | 7135 |
| chr15 | 39006466 | 39007349 | E081 | 13573 |
| chr15 | 38960518 | 38960573 | E082 | -32320 |
| chr15 | 38960652 | 38961725 | E082 | -31168 |