rs13018437

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0237 (7111/29896,GnomAD)
A=0235 (6849/29118,TOPMED)
A=0232 (1160/5008,1000G)
A=0228 (879/3854,ALSPAC)
A=0217 (803/3708,TWINSUK)
chr2:143856197 (GRCh38.p7) (2q22.3)
ND
GWASdb2
1   publication(s)
See rs on genome
22 Enhancers around
1 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.143856197G>A
GRCh37.p13 chr 2NC_000002.11:g.144613766G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.741A=0.259
1000GenomesAmericanSub694G=0.830A=0.170
1000GenomesEast AsianSub1008G=0.793A=0.207
1000GenomesEuropeSub1006G=0.766A=0.234
1000GenomesGlobalStudy-wide5008G=0.768A=0.232
1000GenomesSouth AsianSub978G=0.740A=0.260
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.772A=0.228
The Genome Aggregation DatabaseAfricanSub8688G=0.731A=0.269
The Genome Aggregation DatabaseAmericanSub836G=0.850A=0.150
The Genome Aggregation DatabaseEast AsianSub1612G=0.820A=0.180
The Genome Aggregation DatabaseEuropeSub18458G=0.765A=0.234
The Genome Aggregation DatabaseGlobalStudy-wide29896G=0.762A=0.237
The Genome Aggregation DatabaseOtherSub302G=0.870A=0.130
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.764A=0.235
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.783A=0.217
PMID Title Author Journal
23542338A genomewide association study of smoking relapse in four European population-based samples.Tozzi FPsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs130184378.53E-07nicotine dependence (smoking)23542338

eQTL of rs13018437 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13018437 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr2144574563144574800E067-38966
chr2144574563144574800E069-38966
chr2144597814144597902E069-15864
chr2144597960144598504E069-15262
chr2144581293144581351E070-32415
chr2144582107144582217E070-31549
chr2144582383144582499E070-31267
chr2144583112144583172E070-30594
chr2144649329144650013E07035563
chr2144574563144574800E071-38966
chr2144661137144661339E07247371
chr2144574563144574800E074-38966
chr2144563889144563986E081-49780
chr2144578196144578616E081-35150
chr2144582107144582217E081-31549
chr2144632817144632935E08119051
chr2144633055144633105E08119289
chr2144633168144633470E08119402
chr2144634716144634950E08120950
chr2144635280144635413E08121514
chr2144582383144582499E082-31267
chr2144646757144647213E08232991








Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr2144598698144598748E071-15018