rs13033188

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0362 (10596/29266,GnomAD)
T=0318 (9262/29118,TOPMED)
T=0263 (1317/5008,1000G)
T=0495 (1909/3854,ALSPAC)
T=0486 (1801/3708,TWINSUK)
chr2:129225383 (GRCh38.p7) (2q21.1)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.129225383C>T
GRCh37.p13 chr 2NC_000002.11:g.129982956C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.940T=0.060
1000GenomesAmericanSub694C=0.640T=0.360
1000GenomesEast AsianSub1008C=0.818T=0.182
1000GenomesEuropeSub1006C=0.489T=0.511
1000GenomesGlobalStudy-wide5008C=0.737T=0.263
1000GenomesSouth AsianSub978C=0.700T=0.300
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.505T=0.495
The Genome Aggregation DatabaseAfricanSub8586C=0.882T=0.118
The Genome Aggregation DatabaseAmericanSub826C=0.650T=0.350
The Genome Aggregation DatabaseEast AsianSub1610C=0.846T=0.154
The Genome Aggregation DatabaseEuropeSub17944C=0.505T=0.494
The Genome Aggregation DatabaseGlobalStudy-wide29266C=0.637T=0.362
The Genome Aggregation DatabaseOtherSub300C=0.440T=0.560
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.681T=0.318
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.514T=0.486
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs130331888.33E-06alcohol dependence (age at onset)24962325

eQTL of rs13033188 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13033188 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr2129990903129991022E0707947
chr2129991443129991904E0708487
chr2129990903129991022E0817947
chr2129991443129991904E0818487
chr2129996773129997036E08113817
chr2130010223130010353E08127267
chr2130010398130011293E08127442
chr2129996773129997036E08213817
chr2130010223130010353E08227267