rs13033217

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0384 (11491/29900,GnomAD)
C=0330 (9628/29118,TOPMED)
C=0406 (2031/5008,1000G)
C=0455 (1754/3854,ALSPAC)
C=0470 (1741/3708,TWINSUK)
chr2:129233296 (GRCh38.p7) (2q21.1)
AD
GWASdb2
1   publication(s)
See rs on genome
16 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.129233296T>C
GRCh37.p13 chr 2NC_000002.11:g.129990869T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.893C=0.107
1000GenomesAmericanSub694T=0.490C=0.510
1000GenomesEast AsianSub1008T=0.293C=0.707
1000GenomesEuropeSub1006T=0.572C=0.428
1000GenomesGlobalStudy-wide5008T=0.594C=0.406
1000GenomesSouth AsianSub978T=0.600C=0.400
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.545C=0.455
The Genome Aggregation DatabaseAfricanSub8706T=0.833C=0.167
The Genome Aggregation DatabaseAmericanSub836T=0.480C=0.520
The Genome Aggregation DatabaseEast AsianSub1612T=0.223C=0.777
The Genome Aggregation DatabaseEuropeSub18444T=0.553C=0.446
The Genome Aggregation DatabaseGlobalStudy-wide29900T=0.615C=0.384
The Genome Aggregation DatabaseOtherSub302T=0.620C=0.380
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.669C=0.330
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.530C=0.470
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs130332175.69E-06alcohol dependence (age at onset)24962325

eQTL of rs13033217 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13033217 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr2129990903129991022E07034
chr2129991443129991904E070574
chr2129990903129991022E08134
chr2129991443129991904E081574
chr2129996773129997036E0815904
chr2130010223130010353E08119354
chr2130010398130011293E08119529
chr2130038915130039052E08148046
chr2130039472130039687E08148603
chr2130039843130039996E08148974
chr2129996773129997036E0825904
chr2130010223130010353E08219354
chr2130038591130038845E08247722
chr2130038915130039052E08248046
chr2130039472130039687E08248603
chr2130039843130039996E08248974