rs13034284

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0194 (5824/29916,GnomAD)
T=0194 (5669/29118,TOPMED)
T=0175 (874/5008,1000G)
T=0221 (851/3854,ALSPAC)
T=0213 (789/3708,TWINSUK)
chr2:160553048 (GRCh38.p7) (2q24.2)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.160553048C>T
GRCh37.p13 chr 2NC_000002.11:g.161409559C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.874T=0.126
1000GenomesAmericanSub694C=0.620T=0.380
1000GenomesEast AsianSub1008C=0.979T=0.021
1000GenomesEuropeSub1006C=0.774T=0.226
1000GenomesGlobalStudy-wide5008C=0.825T=0.175
1000GenomesSouth AsianSub978C=0.800T=0.200
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.779T=0.221
The Genome Aggregation DatabaseAfricanSub8714C=0.852T=0.148
The Genome Aggregation DatabaseAmericanSub838C=0.620T=0.380
The Genome Aggregation DatabaseEast AsianSub1612C=0.974T=0.026
The Genome Aggregation DatabaseEuropeSub18452C=0.778T=0.221
The Genome Aggregation DatabaseGlobalStudy-wide29916C=0.805T=0.194
The Genome Aggregation DatabaseOtherSub300C=0.720T=0.280
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.805T=0.194
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.787T=0.213
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs130342840.000018alcohol dependence20201924
rs130342840.0000185alcoholismpha002892

eQTL of rs13034284 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13034284 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.