rs13064447

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
C==0426 (12629/29608,GnomAD)
C==0428 (12478/29118,TOPMED)
C==0338 (1692/5008,1000G)
C==0448 (1726/3854,ALSPAC)
C==0438 (1623/3708,TWINSUK)
chr3:12711632 (GRCh38.p7) (3p25.2)
AD
GWASCatalog
1   publication(s)
See rs on genome
24 Enhancers around
9 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.12711632C>A
GRCh37.p13 chr 3NC_000003.11:g.12753131C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.505A=0.495
1000GenomesAmericanSub694C=0.400A=0.600
1000GenomesEast AsianSub1008C=0.094A=0.906
1000GenomesEuropeSub1006C=0.452A=0.548
1000GenomesGlobalStudy-wide5008C=0.338A=0.662
1000GenomesSouth AsianSub978C=0.200A=0.800
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.448A=0.552
The Genome Aggregation DatabaseAfricanSub8656C=0.499A=0.501
The Genome Aggregation DatabaseAmericanSub830C=0.320A=0.680
The Genome Aggregation DatabaseEast AsianSub1608C=0.100A=0.900
The Genome Aggregation DatabaseEuropeSub18214C=0.426A=0.573
The Genome Aggregation DatabaseGlobalStudy-wide29608C=0.426A=0.573
The Genome Aggregation DatabaseOtherSub300C=0.370A=0.630
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.428A=0.571
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.438A=0.562
PMID Title Author Journal
29071344Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.Zhou HJAMA Psychiatry

P-Value

SNP ID p-value Traits Study
rs130644474E-06alcohol dependence29071344

eQTL of rs13064447 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13064447 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr31279170912792548E06738578
chr31279170912792548E06838578
chr31279957312800125E06846442
chr31280014612800220E06847015
chr31280023712800303E06847106
chr31276123912761291E0698108
chr31276102212761161E0707891
chr31279957312800125E07046442
chr31276102212761161E0717891
chr31275530712755573E0812176
chr31277022712771134E08117096
chr31277185912772473E08118728
chr31277248812772883E08119357
chr31279957312800125E08146442
chr31280014612800220E08147015
chr31280023712800303E08147106
chr31280177412801955E08148643
chr31280200212802042E08148871
chr31280209412802168E08148963
chr31276102212761161E0827891
chr31276211812762204E0828987
chr31279957312800125E08246442
chr31280014612800220E08247015
chr31280023712800303E08247106







Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr31270390812706518E067-46613
chr31270390812706518E068-46613
chr31270390812706518E069-46613
chr31270390812706518E070-46613
chr31270390812706518E071-46613
chr31270390812706518E072-46613
chr31270390812706518E073-46613
chr31270390812706518E074-46613
chr31270390812706518E082-46613