rs13074970

Homo sapiens
C>T
LINC01327 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0479 (14330/29898,GnomAD)
T=0446 (13002/29118,TOPMED)
T=0437 (2187/5008,1000G)
T=0496 (1910/3854,ALSPAC)
C==0491 (1821/3708,TWINSUK)
chr3:167402157 (GRCh38.p7) (3q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
6 Enhancers around
9 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.167402157C>T
GRCh37.p13 chr 3NC_000003.11:g.167119945C>T

Gene: LINC01327, long intergenic non-protein coding RNA 1327(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC01327 transcriptNR_126353.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.595T=0.405
1000GenomesAmericanSub694C=0.570T=0.430
1000GenomesEast AsianSub1008C=0.607T=0.393
1000GenomesEuropeSub1006C=0.488T=0.512
1000GenomesGlobalStudy-wide5008C=0.563T=0.437
1000GenomesSouth AsianSub978C=0.550T=0.450
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.504T=0.496
The Genome Aggregation DatabaseAfricanSub8708C=0.587T=0.413
The Genome Aggregation DatabaseAmericanSub834C=0.600T=0.400
The Genome Aggregation DatabaseEast AsianSub1592C=0.601T=0.399
The Genome Aggregation DatabaseEuropeSub18464C=0.478T=0.521
The Genome Aggregation DatabaseGlobalStudy-wide29898C=0.520T=0.479
The Genome Aggregation DatabaseOtherSub300C=0.580T=0.420
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.553T=0.446
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.491T=0.509
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs130749700.000663alcohol dependence21314694

eQTL of rs13074970 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13074970 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3167079142167079537E068-40408
chr3167079142167079537E074-40408
chr3167073203167073555E081-46390
chr3167098827167098890E081-21055
chr3167101558167101731E081-18214
chr3167115705167115933E081-4012



Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr3167097785167098506E067-21439
chr3167097785167098506E068-21439
chr3167097785167098506E069-21439
chr3167097785167098506E070-21439
chr3167097785167098506E071-21439
chr3167097785167098506E072-21439
chr3167097785167098506E073-21439
chr3167097785167098506E074-21439
chr3167097785167098506E082-21439