| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 3 | NC_000003.12:g.142725783G>T |
| GRCh37.p13 chr 3 | NC_000003.11:g.142444625G>T |
| TRPC1 RefSeqGene | NG_030369.1:g.6360G>T |
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| TRPC1 transcript variant 1 | NM_001251845.1:c. | N/A | Intron Variant |
| TRPC1 transcript variant 2 | NM_003304.4:c. | N/A | Intron Variant |
| TRPC1 transcript variant X3 | XM_005247738.3:c. | N/A | Intron Variant |
| TRPC1 transcript variant X3 | XM_005247739.2:c. | N/A | Intron Variant |
| TRPC1 transcript variant X1 | XM_017007121.1:c. | N/A | Genic Upstream Transcript Variant |
| TRPC1 transcript variant X2 | XM_017007122.1:c. | N/A | Genic Upstream Transcript Variant |
| TRPC1 transcript variant X5 | XR_001740242.1:n. | N/A | Intron Variant |
| TRPC1 transcript variant X6 | XR_001740243.1:n. | N/A | Intron Variant |
| TRPC1 transcript variant X7 | XR_001740244.1:n. | N/A | Intron Variant |
| TRPC1 transcript variant X8 | XR_001740245.1:n. | N/A | Intron Variant |
| TRPC1 transcript variant X9 | XR_241506.3:n. | N/A | Intron Variant |
| TRPC1 transcript variant X5 | XR_001740246.1:n. | N/A | Genic Upstream Transcript Variant |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.978 | T=0.022 |
| 1000Genomes | American | Sub | 694 | G=0.860 | T=0.140 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.998 | T=0.002 |
| 1000Genomes | Europe | Sub | 1006 | G=0.791 | T=0.209 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.911 | T=0.089 |
| 1000Genomes | South Asian | Sub | 978 | G=0.890 | T=0.110 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.804 | T=0.196 |
| The Genome Aggregation Database | African | Sub | 8716 | G=0.959 | T=0.041 |
| The Genome Aggregation Database | American | Sub | 836 | G=0.910 | T=0.090 |
| The Genome Aggregation Database | East Asian | Sub | 1620 | G=1.000 | T=0.000 |
| The Genome Aggregation Database | Europe | Sub | 18458 | G=0.792 | T=0.207 |
| The Genome Aggregation Database | Global | Study-wide | 29932 | G=0.855 | T=0.144 |
| The Genome Aggregation Database | Other | Sub | 302 | G=0.810 | T=0.190 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.861 | T=0.139 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.803 | T=0.197 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs13094259 | 0.000644 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value |
|---|---|---|---|---|
| cg27552955 | chr3:142442915 | TRPC1 | 0.00861013802171543 | 3.7556e-17 |
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr3 | 142404082 | 142404173 | E067 | -40452 |
| chr3 | 142444959 | 142445032 | E067 | 334 |
| chr3 | 142404082 | 142404173 | E068 | -40452 |
| chr3 | 142444959 | 142445032 | E069 | 334 |
| chr3 | 142444959 | 142445032 | E070 | 334 |
| chr3 | 142403466 | 142403581 | E071 | -41044 |
| chr3 | 142404082 | 142404173 | E071 | -40452 |
| chr3 | 142444959 | 142445032 | E071 | 334 |
| chr3 | 142404082 | 142404173 | E072 | -40452 |
| chr3 | 142442177 | 142442220 | E072 | -2405 |
| chr3 | 142404082 | 142404173 | E074 | -40452 |
| chr3 | 142442177 | 142442220 | E081 | -2405 |
| chr3 | 142444959 | 142445032 | E081 | 334 |
| chr3 | 142454494 | 142454577 | E081 | 9869 |
| Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
|---|---|---|---|---|
| chr3 | 142442512 | 142444213 | E067 | -412 |
| chr3 | 142444295 | 142444351 | E067 | -274 |
| chr3 | 142444355 | 142444462 | E067 | -163 |
| chr3 | 142442512 | 142444213 | E068 | -412 |
| chr3 | 142444295 | 142444351 | E068 | -274 |
| chr3 | 142444355 | 142444462 | E068 | -163 |
| chr3 | 142444538 | 142444624 | E068 | -1 |
| chr3 | 142442512 | 142444213 | E069 | -412 |
| chr3 | 142444295 | 142444351 | E069 | -274 |
| chr3 | 142444355 | 142444462 | E069 | -163 |
| chr3 | 142444538 | 142444624 | E069 | -1 |
| chr3 | 142442512 | 142444213 | E070 | -412 |
| chr3 | 142444295 | 142444351 | E070 | -274 |
| chr3 | 142444355 | 142444462 | E070 | -163 |
| chr3 | 142444538 | 142444624 | E070 | -1 |
| chr3 | 142442512 | 142444213 | E071 | -412 |
| chr3 | 142444295 | 142444351 | E071 | -274 |
| chr3 | 142442512 | 142444213 | E072 | -412 |
| chr3 | 142444295 | 142444351 | E072 | -274 |
| chr3 | 142444355 | 142444462 | E072 | -163 |
| chr3 | 142444538 | 142444624 | E072 | -1 |
| chr3 | 142442512 | 142444213 | E073 | -412 |
| chr3 | 142444295 | 142444351 | E073 | -274 |
| chr3 | 142444355 | 142444462 | E073 | -163 |
| chr3 | 142444538 | 142444624 | E073 | -1 |
| chr3 | 142442512 | 142444213 | E074 | -412 |
| chr3 | 142442512 | 142444213 | E081 | -412 |
| chr3 | 142444295 | 142444351 | E081 | -274 |
| chr3 | 142444355 | 142444462 | E081 | -163 |
| chr3 | 142444538 | 142444624 | E081 | -1 |
| chr3 | 142442512 | 142444213 | E082 | -412 |
| chr3 | 142444295 | 142444351 | E082 | -274 |
| chr3 | 142444355 | 142444462 | E082 | -163 |
| chr3 | 142444538 | 142444624 | E082 | -1 |