rs13097862

Homo sapiens
A>C / A>G / A>T
None
Check p-value
SNV (Single Nucleotide Variation)
G=0188 (5646/29940,GnomAD)
G=0215 (6280/29118,TOPMED)
G=0225 (1125/5008,1000G)
G=0120 (462/3854,ALSPAC)
G=0122 (454/3708,TWINSUK)
chr3:63733563 (GRCh38.p7) (3p14.2)
OD
GWASCatalog
1   publication(s)
See rs on genome
43 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.63733563A>C
GRCh38.p7 chr 3NC_000003.12:g.63733563A>G
GRCh38.p7 chr 3NC_000003.12:g.63733563A>T
GRCh37.p13 chr 3NC_000003.11:g.63719239A>C
GRCh37.p13 chr 3NC_000003.11:g.63719239A>G
GRCh37.p13 chr 3NC_000003.11:g.63719239A>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.682G=0.318
1000GenomesAmericanSub694A=0.790G=0.210
1000GenomesEast AsianSub1008A=0.729G=0.271
1000GenomesEuropeSub1006A=0.848G=0.152
1000GenomesGlobalStudy-wide5008A=0.775G=0.225
1000GenomesSouth AsianSub978A=0.860G=0.140
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.880G=0.120
The Genome Aggregation DatabaseAfricanSub8710A=0.696G=0.304
The Genome Aggregation DatabaseAmericanSub838A=0.800G=0.20,
The Genome Aggregation DatabaseEast AsianSub1614A=0.727G=0.273
The Genome Aggregation DatabaseEuropeSub18476A=0.873G=0.126
The Genome Aggregation DatabaseGlobalStudy-wide29940A=0.811G=0.188
The Genome Aggregation DatabaseOtherSub302A=0.810G=0.19,
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.784G=0.215
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.878G=0.122
PMID Title Author Journal
29478698Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans.Cheng ZBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs130978629E-07Opioid dependence29478698

eQTL of rs13097862 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13097862 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr37751694877518229E06829554
chr37751845977518529E06831065
chr37745655677456886E070-30508
chr37751678677516857E07029392
chr37751845977518529E07031065
chr37752465377525088E07037259
chr37752518277525327E07037788
chr37752534677525609E07037952
chr37752573977525997E07038345
chr37751694877518229E07129554
chr37751845977518529E07131065
chr37751694877518229E07329554
chr37750485777504950E08117463
chr37750501377505075E08117619
chr37750540877505526E08118014
chr37750561677505931E08118222
chr37750597077506436E08118576
chr37751334977513686E08125955
chr37751678677516857E08129392
chr37751694877518229E08129554
chr37751845977518529E08131065
chr37752061077520707E08133216
chr37752440077524488E08137006
chr37752465377525088E08137259
chr37752518277525327E08137788
chr37752534677525609E08137952
chr37752573977525997E08138345
chr37752606977526129E08138675
chr37745655677456886E082-30508
chr37750501377505075E08217619
chr37750540877505526E08218014
chr37750561677505931E08218222
chr37750597077506436E08218576
chr37751334977513686E08225955
chr37751678677516857E08229392
chr37751694877518229E08229554
chr37751845977518529E08231065
chr37752440077524488E08237006
chr37752465377525088E08237259
chr37752518277525327E08237788
chr37752534677525609E08237952
chr37752573977525997E08238345
chr37752606977526129E08238675