rs13102102

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0491 (14313/29118,TOPMED)
T==0414 (2074/5008,1000G)
C=0262 (1008/3854,ALSPAC)
C=0250 (928/3708,TWINSUK)
chr4:80152518 (GRCh38.p7) (4q21.21)
AD
GWASdb2
1   publication(s)
See rs on genome
20 Enhancers around
32 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.80152518T>C
GRCh37.p13 chr 4NC_000004.11:g.81073672T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.185C=0.815
1000GenomesAmericanSub694T=0.560C=0.440
1000GenomesEast AsianSub1008T=0.262C=0.738
1000GenomesEuropeSub1006T=0.719C=0.281
1000GenomesGlobalStudy-wide5008T=0.414C=0.586
1000GenomesSouth AsianSub978T=0.470C=0.530
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.738C=0.262
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.491C=0.508
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.750C=0.250
PMID Title Author Journal
23089632A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53.Wang JCMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs131021020.0000111alcohol dependence23089632
rs131021020.0000137alcohol dependence23089632

eQTL of rs13102102 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13102102 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr48110376781104024E06730095
chr48110330381103350E06829631
chr48110337981103756E06829707
chr48111636281116433E06842690
chr48110376781104024E07030095
chr48111636281116433E07142690
chr48110337981103756E07329707
chr48111964881119839E07445976
chr48112026781120317E07446595
chr48112092181121018E07447249
chr48107586381076038E0812191
chr48107617681076316E0812504
chr48107660881076998E0812936
chr48110376781104024E08130095
chr48111461081114660E08140938
chr48111484281114902E08141170
chr48107505481075623E0821382
chr48107586381076038E0822191
chr48107617681076316E0822504
chr48110376781104024E08230095








Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr48110404781108150E06730375
chr48111668781119510E06743015
chr48112001281120062E06746340
chr48112042481120788E06746752
chr48110404781108150E06830375
chr48111668781119510E06843015
chr48112042481120788E06846752
chr48111668781119510E06943015
chr48112001281120062E06946340
chr48112042481120788E06946752
chr48110404781108150E07130375
chr48111668781119510E07143015
chr48112001281120062E07146340
chr48110404781108150E07230375
chr48111668781119510E07243015
chr48112001281120062E07246340
chr48112042481120788E07246752
chr48110404781108150E07330375
chr48111668781119510E07343015
chr48112001281120062E07346340
chr48112042481120788E07346752
chr48110404781108150E07430375
chr48111668781119510E07443015
chr48111668781119510E08143015
chr48112001281120062E08146340
chr48112042481120788E08146752
chr48112168381122161E08148011
chr48110404781108150E08230375
chr48111668781119510E08243015
chr48112001281120062E08246340
chr48112042481120788E08246752
chr48112168381122161E08248011