SNP Detail Info-rs13134142

Variant Details Frequency Publications p-values eSNP meSNP

Genomic Coordinates

Sequence Name	Change(s)
GRCh38.p7 chr 4	NC_000004.12:g.90721760T>G
GRCh37.p13 chr 4	NC_000004.11:g.91642911T>G

Gene: CCSER1, coiled-coil serine rich protein 1(plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
CCSER1 transcript variant 1	NM_001145065.1:c.	N/A	Intron Variant
CCSER1 transcript variant 2	NM_207491.2:c.	N/A	Intron Variant
CCSER1 transcript variant X1	XM_011531936.1:c.	N/A	Intron Variant
CCSER1 transcript variant X3	XM_011531937.2:c.	N/A	Intron Variant
CCSER1 transcript variant X2	XM_011531938.2:c.	N/A	Intron Variant
CCSER1 transcript variant X4	XM_011531939.2:c.	N/A	Intron Variant
CCSER1 transcript variant X6	XM_011531941.2:c.	N/A	Intron Variant
CCSER1 transcript variant X7	XM_011531942.2:c.	N/A	Intron Variant
CCSER1 transcript variant X8	XM_011531943.2:c.	N/A	Intron Variant
CCSER1 transcript variant X10	XM_011531945.1:c.	N/A	Intron Variant
CCSER1 transcript variant X11	XM_011531946.2:c.	N/A	Intron Variant
CCSER1 transcript variant X12	XM_011531947.2:c.	N/A	Intron Variant
CCSER1 transcript variant X14	XM_011531948.1:c.	N/A	Intron Variant
CCSER1 transcript variant X17	XM_011531949.2:c.	N/A	Intron Variant
CCSER1 transcript variant X19	XM_011531950.2:c.	N/A	Intron Variant
CCSER1 transcript variant X18	XM_011531951.2:c.	N/A	Intron Variant
CCSER1 transcript variant X24	XM_011531955.2:c.	N/A	Intron Variant
CCSER1 transcript variant X25	XM_011531956.2:c.	N/A	Intron Variant
CCSER1 transcript variant X27	XM_011531957.2:c.	N/A	Intron Variant
CCSER1 transcript variant X28	XM_011531958.2:c.	N/A	Intron Variant
CCSER1 transcript variant X5	XM_017008194.1:c.	N/A	Intron Variant
CCSER1 transcript variant X9	XM_017008195.1:c.	N/A	Intron Variant
CCSER1 transcript variant X20	XM_017008196.1:c.	N/A	Intron Variant
CCSER1 transcript variant X21	XM_017008197.1:c.	N/A	Intron Variant
CCSER1 transcript variant X22	XM_017008198.1:c.	N/A	Intron Variant
CCSER1 transcript variant X26	XM_017008199.1:c.	N/A	Intron Variant
CCSER1 transcript variant X29	XM_017008200.1:c.	N/A	Genic Downstream Transcript Variant
CCSER1 transcript variant X30	XM_017008201.1:c.	N/A	Genic Downstream Transcript Variant
CCSER1 transcript variant X31	XM_017008202.1:c.	N/A	Genic Downstream Transcript Variant
CCSER1 transcript variant X13	XR_001741218.1:n.	N/A	Intron Variant
CCSER1 transcript variant X15	XR_938733.2:n.	N/A	Intron Variant
CCSER1 transcript variant X16	XR_938734.2:n.	N/A	Intron Variant
CCSER1 transcript variant X23	XR_938735.2:n.	N/A	Intron Variant

Population Frequency

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.998	G=0.002
1000Genomes	American	Sub	694	T=0.950	G=0.050
1000Genomes	East Asian	Sub	1008	T=0.978	G=0.022
1000Genomes	Europe	Sub	1006	T=0.886	G=0.114
1000Genomes	Global	Study-wide	5008	T=0.936	G=0.064
1000Genomes	South Asian	Sub	978	T=0.850	G=0.150
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.900	G=0.100
The Genome Aggregation Database	African	Sub	8716	T=0.984	G=0.016
The Genome Aggregation Database	American	Sub	836	T=0.970	G=0.030
The Genome Aggregation Database	East Asian	Sub	1616	T=0.969	G=0.031
The Genome Aggregation Database	Europe	Sub	18408	T=0.919	G=0.080
The Genome Aggregation Database	Global	Study-wide	29878	T=0.942	G=0.057
The Genome Aggregation Database	Other	Sub	302	T=0.920	G=0.080
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.950	G=0.049
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.902	G=0.098

PMID	Title	Author	Journal
19581569	Genome-wide association study of alcohol dependence.	Treutlein J	Arch Gen Psychiatry

P-Value

SNP ID	p-value	Traits	Study
rs13134142	3.67E-05	alcohol dependence	19581569

eQTL of rs13134142 in Brain tissues (GTEx Analysis Release V7)

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

meQTL of rs13134142 in Fetal Brain

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs13134142

Genomic Coordinates

Gene: CCSER1, coiled-coil serine rich protein 1(plus strand)

Population Frequency

P-Value

eQTL of rs13134142 in Brain tissues (GTEx Analysis Release V7)

meQTL of rs13134142 in Fetal Brain

Genomic View

Chromatin Interaction