rs13138779

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0122 (3566/29118,TOPMED)
A=0134 (3846/28532,GnomAD)
A=0256 (1284/5008,1000G)
A=0080 (310/3854,ALSPAC)
A=0071 (264/3708,TWINSUK)
chr4:80165919 (GRCh38.p7) (4q21.21)
AD
GWASdb2
1   publication(s)
See rs on genome
23 Enhancers around
39 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.80165919G>A
GRCh37.p13 chr 4NC_000004.11:g.81087073G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.862A=0.138
1000GenomesAmericanSub694G=0.750A=0.250
1000GenomesEast AsianSub1008G=0.433A=0.567
1000GenomesEuropeSub1006G=0.913A=0.087
1000GenomesGlobalStudy-wide5008G=0.744A=0.256
1000GenomesSouth AsianSub978G=0.720A=0.280
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.920A=0.080
The Genome Aggregation DatabaseAfricanSub8452G=0.885A=0.115
The Genome Aggregation DatabaseAmericanSub802G=0.760A=0.240
The Genome Aggregation DatabaseEast AsianSub1594G=0.471A=0.529
The Genome Aggregation DatabaseEuropeSub17386G=0.896A=0.103
The Genome Aggregation DatabaseGlobalStudy-wide28532G=0.865A=0.134
The Genome Aggregation DatabaseOtherSub298G=0.870A=0.130
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.877A=0.122
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.929A=0.071
PMID Title Author Journal
23089632A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53.Wang JCMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs131387790.00000975alcohol dependence23089632
rs131387790.000769alcohol dependence23089632

eQTL of rs13138779 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13138779 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr48110376781104024E06716694
chr48110330381103350E06816230
chr48110337981103756E06816306
chr48111636281116433E06829289
chr48110376781104024E07016694
chr48111636281116433E07129289
chr48110337981103756E07316306
chr48111964881119839E07432575
chr48112026781120317E07433194
chr48112092181121018E07433848
chr48107586381076038E081-11035
chr48107617681076316E081-10757
chr48107660881076998E081-10075
chr48110376781104024E08116694
chr48111461081114660E08127537
chr48111484281114902E08127769
chr48112553981125633E08138466
chr48112567881125909E08138605
chr48112988881130008E08142815
chr48107505481075623E082-11450
chr48107586381076038E082-11035
chr48107617681076316E082-10757
chr48110376781104024E08216694








Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr48110404781108150E06716974
chr48111668781119510E06729614
chr48112001281120062E06732939
chr48112042481120788E06733351
chr48110404781108150E06816974
chr48111668781119510E06829614
chr48112042481120788E06833351
chr48112238481124841E06835311
chr48111668781119510E06929614
chr48112001281120062E06932939
chr48112042481120788E06933351
chr48112238481124841E06935311
chr48112238481124841E07035311
chr48110404781108150E07116974
chr48111668781119510E07129614
chr48112001281120062E07132939
chr48112238481124841E07135311
chr48110404781108150E07216974
chr48111668781119510E07229614
chr48112001281120062E07232939
chr48112042481120788E07233351
chr48110404781108150E07316974
chr48111668781119510E07329614
chr48112001281120062E07332939
chr48112042481120788E07333351
chr48112238481124841E07335311
chr48110404781108150E07416974
chr48111668781119510E07429614
chr48111668781119510E08129614
chr48112001281120062E08132939
chr48112042481120788E08133351
chr48112168381122161E08134610
chr48110404781108150E08216974
chr48111668781119510E08229614
chr48112001281120062E08232939
chr48112042481120788E08233351
chr48112168381122161E08234610
chr48112238481124841E08235311
chr48112619881126494E08239125