rs13148112

Homo sapiens
G>A
LOC729307 : Non Coding Transcript Variant
LOC105377441 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G==0247 (7400/29928,GnomAD)
G==0252 (7361/29118,TOPMED)
G==0233 (1169/5008,1000G)
G==0229 (883/3854,ALSPAC)
G==0234 (868/3708,TWINSUK)
chr4:137197751 (GRCh38.p7) (4q28.3)
AD
GWASdb2
1   publication(s)
See rs on genome
6 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.137197751G>A
GRCh37.p13 chr 4NC_000004.11:g.138118905G>A

Gene: LOC729307, uncharacterized LOC729307(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC02510 transcriptNR_134640.1:n.960G>AG>ANon Coding Transcript Variant

Gene: LOC105377441, uncharacterized LOC105377441(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105377441 transcript variant X1XR_001741835.1:n.N/AIntron Variant
LOC105377441 transcript variant X2XR_001741836.1:n.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.250A=0.750
1000GenomesAmericanSub694G=0.370A=0.630
1000GenomesEast AsianSub1008G=0.132A=0.868
1000GenomesEuropeSub1006G=0.252A=0.748
1000GenomesGlobalStudy-wide5008G=0.233A=0.767
1000GenomesSouth AsianSub978G=0.200A=0.800
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.229A=0.771
The Genome Aggregation DatabaseAfricanSub8708G=0.259A=0.741
The Genome Aggregation DatabaseAmericanSub832G=0.350A=0.650
The Genome Aggregation DatabaseEast AsianSub1620G=0.120A=0.880
The Genome Aggregation DatabaseEuropeSub18466G=0.250A=0.749
The Genome Aggregation DatabaseGlobalStudy-wide29928G=0.247A=0.752
The Genome Aggregation DatabaseOtherSub302G=0.150A=0.850
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.252A=0.747
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.234A=0.766
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs131481121.05E-05alcohol consumption23743675

eQTL of rs13148112 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13148112 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr4138127852138128346E0708947
chr4138127852138128346E0748947
chr4138134603138134662E07415698
chr4138134825138135023E07415920
chr4138127852138128346E0818947
chr4138127852138128346E0828947