rs13170855

Homo sapiens
C>T
STK32A : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0155 (4650/29958,GnomAD)
T=0164 (4799/29118,TOPMED)
T=0235 (1175/5008,1000G)
T=0136 (524/3854,ALSPAC)
T=0141 (524/3708,TWINSUK)
chr5:147295570 (GRCh38.p7) (5q32)
ND
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.147295570C>T
GRCh37.p13 chr 5NC_000005.9:g.146675133C>T

Gene: STK32A, serine/threonine kinase 32A(plus strand)

Molecule type Change Amino acid[Codon] SO Term
STK32A transcript variant 1NM_001112724.1:c.N/AIntron Variant
STK32A transcript variant 3NM_001287740.1:c.N/AIntron Variant
STK32A transcript variant 2NM_145001.3:c.N/AIntron Variant
STK32A transcript variant X1XM_011537576.1:c.N/AIntron Variant
STK32A transcript variant X2XM_011537577.2:c.N/AIntron Variant
STK32A transcript variant X7XM_011537579.2:c.N/AIntron Variant
STK32A transcript variant X3XM_017009213.1:c.N/AIntron Variant
STK32A transcript variant X4XM_017009214.1:c.N/AGenic Upstream Transcript Variant
STK32A transcript variant X5XR_001742037.1:n.N/AIntron Variant
STK32A transcript variant X6XR_001742038.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.828T=0.172
1000GenomesAmericanSub694C=0.840T=0.160
1000GenomesEast AsianSub1008C=0.430T=0.570
1000GenomesEuropeSub1006C=0.881T=0.119
1000GenomesGlobalStudy-wide5008C=0.765T=0.235
1000GenomesSouth AsianSub978C=0.850T=0.150
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.864T=0.136
The Genome Aggregation DatabaseAfricanSub8728C=0.822T=0.178
The Genome Aggregation DatabaseAmericanSub838C=0.820T=0.180
The Genome Aggregation DatabaseEast AsianSub1612C=0.471T=0.529
The Genome Aggregation DatabaseEuropeSub18478C=0.889T=0.110
The Genome Aggregation DatabaseGlobalStudy-wide29958C=0.844T=0.155
The Genome Aggregation DatabaseOtherSub302C=0.840T=0.160
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.835T=0.164
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.859T=0.141
PMID Title Author Journal
20158304A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.Lind PATwin Res Hum Genet

P-Value

SNP ID p-value Traits Study
rs131708558.27E-06alcohol and nictotine co-dependence20158304

eQTL of rs13170855 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13170855 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr5146635102146635239E070-39894
chr5146712208146712601E07037075
chr5146712208146712601E07437075