SNP Detail Info-rs13174549

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.159035468C>T
GRCh37.p13 chr 5	NC_000005.9:g.158462476C>T

Molecule type	Change	Amino acid[Codon]	SO Term
EBF1 transcript variant 1	NM_001290360.2:c.	N/A	Intron Variant
EBF1 transcript variant 4	NM_001324101.1:c.	N/A	Intron Variant
EBF1 transcript variant 5	NM_001324103.1:c.	N/A	Intron Variant
EBF1 transcript variant 6	NM_001324106.1:c.	N/A	Intron Variant
EBF1 transcript variant 7	NM_001324107.1:c.	N/A	Intron Variant
EBF1 transcript variant 8	NM_001324108.1:c.	N/A	Intron Variant
EBF1 transcript variant 9	NM_001324109.1:c.	N/A	Intron Variant
EBF1 transcript variant 10	NM_001324111.1:c.	N/A	Intron Variant
EBF1 transcript variant 2	NM_024007.4:c.	N/A	Intron Variant
EBF1 transcript variant 3	NM_182708.2:c.	N/A	Intron Variant
EBF1 transcript variant X1	XM_017009192.1:c.	N/A	Intron Variant
EBF1 transcript variant X2	XM_017009193.1:c.	N/A	Intron Variant
EBF1 transcript variant X3	XM_017009194.1:c.	N/A	Intron Variant
EBF1 transcript variant X4	XM_017009195.1:c.	N/A	Intron Variant
EBF1 transcript variant X5	XM_017009196.1:c.	N/A	Intron Variant
EBF1 transcript variant X6	XM_017009197.1:c.	N/A	Intron Variant
EBF1 transcript variant X7	XM_017009198.1:c.	N/A	Intron Variant
EBF1 transcript variant X9	XM_017009200.1:c.	N/A	Intron Variant
EBF1 transcript variant X10	XM_017009201.1:c.	N/A	Intron Variant
EBF1 transcript variant X17	XM_017009202.1:c.	N/A	Intron Variant
EBF1 transcript variant X18	XM_017009203.1:c.	N/A	Intron Variant
EBF1 transcript variant X14	XM_017009199.1:c.	N/A	Genic Upstream Transcript Variant
EBF1 transcript variant X19	XM_017009204.1:c.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.887	T=0.113
1000Genomes	American	Sub	694	C=0.950	T=0.050
1000Genomes	East Asian	Sub	1008	C=0.919	T=0.081
1000Genomes	Europe	Sub	1006	C=0.935	T=0.065
1000Genomes	Global	Study-wide	5008	C=0.918	T=0.082
1000Genomes	South Asian	Sub	978	C=0.920	T=0.080
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.936	T=0.064
The Genome Aggregation Database	African	Sub	8702	C=0.893	T=0.107
The Genome Aggregation Database	American	Sub	836	C=0.940	T=0.060
The Genome Aggregation Database	East Asian	Sub	1616	C=0.912	T=0.088
The Genome Aggregation Database	Europe	Sub	18474	C=0.935	T=0.064
The Genome Aggregation Database	Global	Study-wide	29930	C=0.922	T=0.078
The Genome Aggregation Database	Other	Sub	302	C=0.920	T=0.080
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.912	T=0.087
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.933	T=0.067

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs13174549	0.00063	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr5	158448249	158448463	E069	-14013
chr5	158448514	158449775	E069	-12701
chr5	158488922	158489571	E069	26446
chr5	158424597	158424647	E070	-37829
chr5	158448514	158449775	E070	-12701
chr5	158438661	158438834	E071	-23642
chr5	158448249	158448463	E071	-14013
chr5	158488922	158489571	E071	26446
chr5	158429036	158429191	E073	-33285
chr5	158429253	158429475	E073	-33001
chr5	158448514	158449775	E073	-12701
chr5	158488922	158489571	E073	26446
chr5	158427009	158427147	E081	-35329
chr5	158445959	158446139	E081	-16337
chr5	158446180	158446278	E081	-16198
chr5	158448249	158448463	E081	-14013
chr5	158448514	158449775	E081	-12701
chr5	158447447	158447615	E082	-14861
chr5	158448249	158448463	E082	-14013
chr5	158448514	158449775	E082	-12701
chr5	158509399	158509566	E082	46923
chr5	158509590	158509706	E082	47114

rs13174549