rs1320561

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0492 (14722/29914,GnomAD)
G==0487 (14195/29118,TOPMED)
G==0483 (2421/5008,1000G)
G==0410 (1581/3854,ALSPAC)
G==0420 (1558/3708,TWINSUK)
chr20:23117243 (GRCh38.p7) (20p11.21)
AD
GWASdb2
1   publication(s)
See rs on genome
135 Enhancers around
17 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 20NC_000020.11:g.23117243G>A
GRCh37.p13 chr 20NC_000020.10:g.23097880G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.656A=0.344
1000GenomesAmericanSub694G=0.360A=0.640
1000GenomesEast AsianSub1008G=0.438A=0.562
1000GenomesEuropeSub1006G=0.439A=0.561
1000GenomesGlobalStudy-wide5008G=0.483A=0.517
1000GenomesSouth AsianSub978G=0.430A=0.570
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.410A=0.590
The Genome Aggregation DatabaseAfricanSub8702G=0.637A=0.363
The Genome Aggregation DatabaseAmericanSub836G=0.390A=0.610
The Genome Aggregation DatabaseEast AsianSub1620G=0.472A=0.528
The Genome Aggregation DatabaseEuropeSub18456G=0.456A=0.543
The Genome Aggregation DatabaseGlobalStudy-wide29914G=0.507A=0.492
The Genome Aggregation DatabaseOtherSub300G=0.460A=0.540
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.487A=0.512
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.420A=0.580
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs13205610.000806alcohol dependence21314694

eQTL of rs1320561 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1320561 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr202310525523105789E0677375
chr202310582423105998E0677944
chr202310601023106146E0678130
chr202310624323106780E0678363
chr202309519123095285E068-2595
chr202309532923095373E068-2507
chr202309546123095554E068-2326
chr202310525523105789E0687375
chr202310582423105998E0687944
chr202310601023106146E0688130
chr202310624323106780E0688363
chr202310772723107777E0689847
chr202312216623122437E06824286
chr202312249523122819E06824615
chr202312289823124348E06825018
chr202312520323125443E06827323
chr202312796323129645E06830083
chr202310460323104846E0696723
chr202310525523105789E0697375
chr202310582423105998E0697944
chr202310601023106146E0698130
chr202310624323106780E0698363
chr202310678823107234E0698908
chr202310729323107538E0699413
chr202314110023141150E06943220
chr202314121523141455E06943335
chr202314153323141593E06943653
chr202314462523145457E06946745
chr202305876923058851E070-39029
chr202305924123059535E070-38345
chr202305953823059699E070-38181
chr202305972223059935E070-37945
chr202306008323060137E070-37743
chr202306033923060389E070-37491
chr202306072423060796E070-37084
chr202306087123060921E070-36959
chr202306151923061580E070-36300
chr202307477023074843E070-23037
chr202307491223074956E070-22924
chr202307495923075017E070-22863
chr202307527023075320E070-22560
chr202307611123076180E070-21700
chr202307627523076398E070-21482
chr202310525523105789E0707375
chr202310582423105998E0707944
chr202310601023106146E0708130
chr202310624323106780E0708363
chr202314121523141455E07043335
chr202314153323141593E07043653
chr202306257623062626E071-35254
chr202306262723062707E071-35173
chr202307649423076534E071-21346
chr202308457823084628E071-13252
chr202308469523084735E071-13145
chr202308513723085196E071-12684
chr202308751923087959E071-9921
chr202309424123094441E071-3439
chr202310014823100359E0712268
chr202310047623100798E0712596
chr202310525523105789E0717375
chr202310582423105998E0717944
chr202310601023106146E0718130
chr202310624323106780E0718363
chr202310678823107234E0718908
chr202310729323107538E0719413
chr202310772723107777E0719847
chr202310783723107947E0719957
chr202310819923108259E07110319
chr202310834123108578E07110461
chr202310881623108926E07110936
chr202310907023109325E07111190
chr202310937023109436E07111490
chr202310950223109561E07111622
chr202310956823109626E07111688
chr202310975123109805E07111871
chr202312249523122819E07124615
chr202312289823124348E07125018
chr202312520323125443E07127323
chr202312558723126790E07127707
chr202312685223127199E07128972
chr202312761823127926E07129738
chr202312796323129645E07130083
chr202312997423130105E07132094
chr202314027723141014E07142397
chr202314110023141150E07143220
chr202314121523141455E07143335
chr202314153323141593E07143653
chr202314462523145457E07146745
chr202310582423105998E0727944
chr202310601023106146E0728130
chr202310624323106780E0728363
chr202310678823107234E0728908
chr202310729323107538E0729413
chr202311310123113369E07215221
chr202306745923067558E073-30322
chr202306756523067650E073-30230
chr202306765323068069E073-29811
chr202306813423068294E073-29586
chr202308316723083223E073-14657
chr202310582423105998E0737944
chr202310601023106146E0738130
chr202310624323106780E0738363
chr202310678823107234E0738908
chr202311084023110884E07312960
chr202314121523141455E07343335
chr202314153323141593E07343653
chr202314193323143405E07344053
chr202306756523067650E074-30230
chr202306765323068069E074-29811
chr202306813423068294E074-29586
chr202306845723068530E074-29350
chr202306866123068776E074-29104
chr202308751923087959E074-9921
chr202310525523105789E0747375
chr202310582423105998E0747944
chr202310601023106146E0748130
chr202310624323106780E0748363
chr202310678823107234E0748908
chr202310881623108926E07410936
chr202310907023109325E07411190
chr202310937023109436E07411490
chr202310950223109561E07411622
chr202310956823109626E07411688
chr202310975123109805E07411871
chr202312558723126790E07427707
chr202314027723141014E07442397
chr202314110023141150E07443220
chr202314121523141455E07443335
chr202314153323141593E07443653
chr202314172523141876E07443845
chr202314348123143531E08145601
chr202314356523143638E08145685
chr202305953823059699E082-38181
chr202305972223059935E082-37945
chr202306008323060137E082-37743










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr202306541323066036E068-31844
chr202306508623065128E069-32752
chr202306513423065329E069-32551
chr202306541323066036E069-31844
chr202306423523064724E071-33156
chr202306479523064925E071-32955
chr202306508623065128E071-32752
chr202306513423065329E071-32551
chr202306541323066036E071-31844
chr202306610223067443E071-30437
chr202306423523064724E073-33156
chr202306479523064925E073-32955
chr202306508623065128E073-32752
chr202306513423065329E073-32551
chr202306541323066036E073-31844
chr202306541323066036E074-31844
chr202306610223067443E074-30437