SNP Detail Info-rs13206561

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0088 (2638/29902,GnomAD)
A=0080 (2334/29118,TOPMED)
A=0039 (195/5008,1000G)
A=0145 (559/3854,ALSPAC)
A=0145 (539/3708,TWINSUK)

Position: chr6:85224724 (GRCh38.p7) (6q14.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 6	NC_000006.12:g.85224724G>A
GRCh37.p13 chr 6	NC_000006.11:g.85934442G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.995	A=0.005
1000Genomes	American	Sub	694	G=0.940	A=0.060
1000Genomes	East Asian	Sub	1008	G=0.999	A=0.001
1000Genomes	Europe	Sub	1006	G=0.866	A=0.134
1000Genomes	Global	Study-wide	5008	G=0.961	A=0.039
1000Genomes	South Asian	Sub	978	G=0.990	A=0.010
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.855	A=0.145
The Genome Aggregation Database	African	Sub	8720	G=0.977	A=0.023
The Genome Aggregation Database	American	Sub	838	G=0.940	A=0.060
The Genome Aggregation Database	East Asian	Sub	1592	G=1.000	A=0.000
The Genome Aggregation Database	Europe	Sub	18450	G=0.872	A=0.127
The Genome Aggregation Database	Global	Study-wide	29902	G=0.911	A=0.088
The Genome Aggregation Database	Other	Sub	302	G=0.900	A=0.100
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.919	A=0.080
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.855	A=0.145

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs13206561	0.00044	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs13206561