rs13208357

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0100 (2992/29918,GnomAD)
T=0092 (2698/29118,TOPMED)
T=0069 (348/5008,1000G)
T=0147 (568/3854,ALSPAC)
T=0145 (537/3708,TWINSUK)
chr6:93679742 (GRCh38.p7) (6q16.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
3 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.93679742C>T
GRCh37.p13 chr 6NC_000006.11:g.94389460C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.977T=0.023
1000GenomesAmericanSub694C=0.840T=0.160
1000GenomesEast AsianSub1008C=0.999T=0.001
1000GenomesEuropeSub1006C=0.847T=0.153
1000GenomesGlobalStudy-wide5008C=0.931T=0.069
1000GenomesSouth AsianSub978C=0.950T=0.050
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.853T=0.147
The Genome Aggregation DatabaseAfricanSub8706C=0.971T=0.029
The Genome Aggregation DatabaseAmericanSub838C=0.870T=0.130
The Genome Aggregation DatabaseEast AsianSub1610C=0.999T=0.001
The Genome Aggregation DatabaseEuropeSub18462C=0.859T=0.140
The Genome Aggregation DatabaseGlobalStudy-wide29918C=0.900T=0.100
The Genome Aggregation DatabaseOtherSub302C=0.900T=0.100
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.907T=0.092
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.855T=0.145
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs132083570.00022alcohol dependence20201924

eQTL of rs13208357 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13208357 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr69438859194389045E067-415
chr69438859194389045E068-415
chr69438859194389045E071-415