rs13208542

Homo sapiens
G>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0300 (8973/29898,GnomAD)
C=0330 (9616/29118,TOPMED)
C=0239 (1197/5008,1000G)
C=0282 (1086/3854,ALSPAC)
C=0268 (993/3708,TWINSUK)
chr6:150535634 (GRCh38.p7) (6q25.1)
ND
GWASdb2
1   publication(s)
See rs on genome
93 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.150535634G>C
GRCh37.p13 chr 6NC_000006.11:g.150856770G>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.598C=0.402
1000GenomesAmericanSub694G=0.840C=0.160
1000GenomesEast AsianSub1008G=0.939C=0.061
1000GenomesEuropeSub1006G=0.686C=0.314
1000GenomesGlobalStudy-wide5008G=0.761C=0.239
1000GenomesSouth AsianSub978G=0.820C=0.180
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.718C=0.282
The Genome Aggregation DatabaseAfricanSub8698G=0.609C=0.391
The Genome Aggregation DatabaseAmericanSub836G=0.820C=0.180
The Genome Aggregation DatabaseEast AsianSub1622G=0.957C=0.043
The Genome Aggregation DatabaseEuropeSub18440G=0.714C=0.285
The Genome Aggregation DatabaseGlobalStudy-wide29898G=0.699C=0.300
The Genome Aggregation DatabaseOtherSub302G=0.710C=0.290
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.669C=0.330
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.732C=0.268
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs132085420.000588nicotine dependence17158188

eQTL of rs13208542 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13208542 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr6150867717150867929E06710947
chr6150867967150868112E06711197
chr6150868144150868204E06711374
chr6150868249150868419E06711479
chr6150868455150869205E06711685
chr6150900856150900996E06744086
chr6150901126150901288E06744356
chr6150901289150901365E06744519
chr6150901385150901435E06744615
chr6150903186150904154E06746416
chr6150904157150904336E06747387
chr6150807801150807865E068-48905
chr6150858596150859709E0681826
chr6150859765150859865E0682995
chr6150867717150867929E06810947
chr6150867967150868112E06811197
chr6150868144150868204E06811374
chr6150868249150868419E06811479
chr6150868455150869205E06811685
chr6150857938150858506E0691168
chr6150858596150859709E0691826
chr6150868455150869205E06911685
chr6150888491150888807E06931721
chr6150888815150889074E06932045
chr6150889228150889472E06932458
chr6150889486150889631E06932716
chr6150900856150900996E06944086
chr6150901126150901288E06944356
chr6150901289150901365E06944519
chr6150901385150901435E06944615
chr6150867717150867929E07010947
chr6150867967150868112E07011197
chr6150868144150868204E07011374
chr6150868249150868419E07011479
chr6150868455150869205E07011685
chr6150888491150888807E07031721
chr6150888815150889074E07032045
chr6150857938150858506E0711168
chr6150858596150859709E0711826
chr6150867717150867929E07110947
chr6150867967150868112E07111197
chr6150868144150868204E07111374
chr6150868249150868419E07111479
chr6150868455150869205E07111685
chr6150888491150888807E07131721
chr6150888815150889074E07132045
chr6150889228150889472E07132458
chr6150889486150889631E07132716
chr6150889715150889848E07132945
chr6150889876150889928E07133106
chr6150889994150890958E07133224
chr6150893602150893694E07136832
chr6150900856150900996E07144086
chr6150901126150901288E07144356
chr6150901289150901365E07144519
chr6150901385150901435E07144615
chr6150901707150901882E07144937
chr6150903186150904154E07146416
chr6150904157150904336E07147387
chr6150858596150859709E0721826
chr6150900856150900996E07244086
chr6150901126150901288E07244356
chr6150901289150901365E07244519
chr6150901385150901435E07244615
chr6150901707150901882E07244937
chr6150901903150901953E07245133
chr6150903186150904154E07246416
chr6150904157150904336E07247387
chr6150858596150859709E0731826
chr6150859765150859865E0732995
chr6150868249150868419E07311479
chr6150868455150869205E07311685
chr6150857938150858506E0741168
chr6150858596150859709E0741826
chr6150867441150867583E07410671
chr6150867717150867929E07410947
chr6150867967150868112E07411197
chr6150868144150868204E07411374
chr6150868249150868419E07411479
chr6150868455150869205E07411685
chr6150888815150889074E07432045
chr6150889228150889472E07432458
chr6150893602150893694E07436832
chr6150900856150900996E07444086
chr6150901126150901288E07444356
chr6150901289150901365E07444519
chr6150901385150901435E07444615
chr6150841629150841703E081-15067
chr6150841812150842351E081-14419
chr6150843245150843295E081-13475
chr6150903186150904154E08146416
chr6150888815150889074E08232045
chr6150889228150889472E08232458