rs13208556

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0289 (8591/29716,GnomAD)
T=0271 (7890/29118,TOPMED)
T=0219 (1095/5008,1000G)
T=0397 (1531/3854,ALSPAC)
T=0392 (1454/3708,TWINSUK)
chr6:82121594 (GRCh38.p7) (6q14.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.82121594C>T
GRCh37.p13 chr 6NC_000006.11:g.82831311C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.908T=0.092
1000GenomesAmericanSub694C=0.740T=0.260
1000GenomesEast AsianSub1008C=0.823T=0.177
1000GenomesEuropeSub1006C=0.604T=0.396
1000GenomesGlobalStudy-wide5008C=0.781T=0.219
1000GenomesSouth AsianSub978C=0.780T=0.220
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.603T=0.397
The Genome Aggregation DatabaseAfricanSub8654C=0.872T=0.128
The Genome Aggregation DatabaseAmericanSub836C=0.750T=0.250
The Genome Aggregation DatabaseEast AsianSub1586C=0.839T=0.161
The Genome Aggregation DatabaseEuropeSub18342C=0.623T=0.376
The Genome Aggregation DatabaseGlobalStudy-wide29716C=0.710T=0.289
The Genome Aggregation DatabaseOtherSub298C=0.630T=0.370
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.729T=0.271
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.608T=0.392
PMID Title Author Journal
24277619ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.Quillen EEAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs132085560.000195alcohol consumption (maxi-drinks)24277619

eQTL of rs13208556 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13208556 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr68285369482855110E06722383
chr68279391682794864E068-36447
chr68279919982799390E069-31921
chr68285369482855110E06922383
chr68279391682794864E071-36447
chr68279391682794864E072-36447
chr68285369482855110E07222383
chr68285517282855289E07223861
chr68285537582855463E07224064
chr68279391682794864E074-36447
chr68279919982799390E074-31921
chr68285369482855110E07422383