Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 6 | NC_000006.12:g.82121594C>T |
GRCh37.p13 chr 6 | NC_000006.11:g.82831311C>T |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.908 | T=0.092 |
1000Genomes | American | Sub | 694 | C=0.740 | T=0.260 |
1000Genomes | East Asian | Sub | 1008 | C=0.823 | T=0.177 |
1000Genomes | Europe | Sub | 1006 | C=0.604 | T=0.396 |
1000Genomes | Global | Study-wide | 5008 | C=0.781 | T=0.219 |
1000Genomes | South Asian | Sub | 978 | C=0.780 | T=0.220 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.603 | T=0.397 |
The Genome Aggregation Database | African | Sub | 8654 | C=0.872 | T=0.128 |
The Genome Aggregation Database | American | Sub | 836 | C=0.750 | T=0.250 |
The Genome Aggregation Database | East Asian | Sub | 1586 | C=0.839 | T=0.161 |
The Genome Aggregation Database | Europe | Sub | 18342 | C=0.623 | T=0.376 |
The Genome Aggregation Database | Global | Study-wide | 29716 | C=0.710 | T=0.289 |
The Genome Aggregation Database | Other | Sub | 298 | C=0.630 | T=0.370 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.729 | T=0.271 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.608 | T=0.392 |
PMID | Title | Author | Journal |
---|---|---|---|
24277619 | ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample. | Quillen EE | Am J Med Genet B Neuropsychiatr Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs13208556 | 0.000195 | alcohol consumption (maxi-drinks) | 24277619 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr6 | 82853694 | 82855110 | E067 | 22383 |
chr6 | 82793916 | 82794864 | E068 | -36447 |
chr6 | 82799199 | 82799390 | E069 | -31921 |
chr6 | 82853694 | 82855110 | E069 | 22383 |
chr6 | 82793916 | 82794864 | E071 | -36447 |
chr6 | 82793916 | 82794864 | E072 | -36447 |
chr6 | 82853694 | 82855110 | E072 | 22383 |
chr6 | 82855172 | 82855289 | E072 | 23861 |
chr6 | 82855375 | 82855463 | E072 | 24064 |
chr6 | 82793916 | 82794864 | E074 | -36447 |
chr6 | 82799199 | 82799390 | E074 | -31921 |
chr6 | 82853694 | 82855110 | E074 | 22383 |