rs13235830

Homo sapiens
G>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0367 (11003/29920,GnomAD)
T=0382 (11129/29118,TOPMED)
T=0431 (2159/5008,1000G)
T=0387 (1491/3854,ALSPAC)
T=0390 (1446/3708,TWINSUK)
chr7:35411290 (GRCh38.p7) (7p14.2)
AD
GWASdb2
1   publication(s)
See rs on genome
1 Enhancer around
3 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.35411290G>T
GRCh37.p13 chr 7NC_000007.13:g.35450900G>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.681T=0.319
1000GenomesAmericanSub694G=0.570T=0.430
1000GenomesEast AsianSub1008G=0.534T=0.466
1000GenomesEuropeSub1006G=0.582T=0.418
1000GenomesGlobalStudy-wide5008G=0.569T=0.431
1000GenomesSouth AsianSub978G=0.440T=0.560
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.613T=0.387
The Genome Aggregation DatabaseAfricanSub8702G=0.674T=0.326
The Genome Aggregation DatabaseAmericanSub838G=0.550T=0.450
The Genome Aggregation DatabaseEast AsianSub1608G=0.570T=0.430
The Genome Aggregation DatabaseEuropeSub18470G=0.623T=0.376
The Genome Aggregation DatabaseGlobalStudy-wide29920G=0.632T=0.367
The Genome Aggregation DatabaseOtherSub302G=0.540T=0.460
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.617T=0.382
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.610T=0.390
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs132358308.81E-05alcohol consumption23743675

eQTL of rs13235830 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13235830 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr73548969335491153E08238793

Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr73549394535494430E07043045
chr73549444135494565E07343541
chr73549463235494938E08243732