rs1323806

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0434 (12993/29914,GnomAD)
T=0413 (12026/29118,TOPMED)
T=0471 (2358/5008,1000G)
T=0490 (1890/3854,ALSPAC)
T=0496 (1841/3708,TWINSUK)
chr9:107243804 (GRCh38.p7) (9q31.2)
AD
GWASdb2
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.107243804C>T
GRCh37.p13 chr 9NC_000009.11:g.110006085C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.740T=0.260
1000GenomesAmericanSub694C=0.590T=0.410
1000GenomesEast AsianSub1008C=0.293T=0.707
1000GenomesEuropeSub1006C=0.478T=0.522
1000GenomesGlobalStudy-wide5008C=0.529T=0.471
1000GenomesSouth AsianSub978C=0.490T=0.510
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.510T=0.490
The Genome Aggregation DatabaseAfricanSub8704C=0.707T=0.293
The Genome Aggregation DatabaseAmericanSub838C=0.520T=0.480
The Genome Aggregation DatabaseEast AsianSub1614C=0.279T=0.721
The Genome Aggregation DatabaseEuropeSub18456C=0.529T=0.470
The Genome Aggregation DatabaseGlobalStudy-wide29914C=0.565T=0.434
The Genome Aggregation DatabaseOtherSub302C=0.370T=0.630
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.587T=0.413
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.504T=0.496
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs13238060.000867alcohol dependence20201924

eQTL of rs1323806 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1323806 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr9110050551110050703E06744466
chr9110050906110051244E06744821
chr9110051399110051457E06745314
chr9110051729110051779E06745644
chr9110052022110052149E06745937
chr9110052265110052620E06746180
chr9110053240110053310E06747155
chr9110052265110052620E06846180
chr9110052756110052813E06846671
chr9110050453110050504E06944368
chr9110050551110050703E06944466
chr9110050906110051244E06944821
chr9110052022110052149E06945937
chr9110052265110052620E06946180
chr9110052756110052813E06946671
chr9110053240110053310E06947155
chr9110055220110055501E06949135
chr9110055593110055657E06949508
chr9109989871109991015E070-15070
chr9109991045109991232E070-14853
chr9109991353109992227E070-13858
chr9110052022110052149E07145937
chr9110052265110052620E07146180
chr9110052756110052813E07146671
chr9110053240110053310E07147155
chr9110055220110055501E07149135
chr9110055593110055657E07149508
chr9110052265110052620E07246180
chr9110052756110052813E07246671
chr9110052265110052620E07346180
chr9110052022110052149E07445937
chr9110052265110052620E07446180
chr9110052756110052813E07446671
chr9110053240110053310E07447155
chr9110055220110055501E07449135
chr9110055593110055657E07449508
chr9110055687110055731E07449602
chr9109989871109991015E081-15070
chr9109991045109991232E081-14853
chr9109991353109992227E081-13858
chr9109992519109992569E081-13516
chr9109989871109991015E082-15070
chr9109991045109991232E082-14853
chr9109991353109992227E082-13858
chr9110055033110055155E08248948
chr9110055593110055657E08249508
chr9110055687110055731E08249602










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr9110044267110047386E06738182
chr9110047399110048128E06741314
chr9110044267110047386E06838182
chr9110047399110048128E06841314
chr9110044267110047386E06938182
chr9110047399110048128E06941314
chr9110044267110047386E07038182
chr9110047399110048128E07041314
chr9110044267110047386E07138182
chr9110044267110047386E07238182
chr9110047399110048128E07241314
chr9110044267110047386E07338182
chr9110047399110048128E07341314
chr9110044267110047386E07438182
chr9110044267110047386E08138182
chr9110047399110048128E08141314
chr9110044267110047386E08238182
chr9110047399110048128E08241314