Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 9 | NC_000009.12:g.107243804C>T |
GRCh37.p13 chr 9 | NC_000009.11:g.110006085C>T |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.740 | T=0.260 |
1000Genomes | American | Sub | 694 | C=0.590 | T=0.410 |
1000Genomes | East Asian | Sub | 1008 | C=0.293 | T=0.707 |
1000Genomes | Europe | Sub | 1006 | C=0.478 | T=0.522 |
1000Genomes | Global | Study-wide | 5008 | C=0.529 | T=0.471 |
1000Genomes | South Asian | Sub | 978 | C=0.490 | T=0.510 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.510 | T=0.490 |
The Genome Aggregation Database | African | Sub | 8704 | C=0.707 | T=0.293 |
The Genome Aggregation Database | American | Sub | 838 | C=0.520 | T=0.480 |
The Genome Aggregation Database | East Asian | Sub | 1614 | C=0.279 | T=0.721 |
The Genome Aggregation Database | Europe | Sub | 18456 | C=0.529 | T=0.470 |
The Genome Aggregation Database | Global | Study-wide | 29914 | C=0.565 | T=0.434 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.370 | T=0.630 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.587 | T=0.413 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.504 | T=0.496 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs1323806 | 0.000867 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr9 | 110050551 | 110050703 | E067 | 44466 |
chr9 | 110050906 | 110051244 | E067 | 44821 |
chr9 | 110051399 | 110051457 | E067 | 45314 |
chr9 | 110051729 | 110051779 | E067 | 45644 |
chr9 | 110052022 | 110052149 | E067 | 45937 |
chr9 | 110052265 | 110052620 | E067 | 46180 |
chr9 | 110053240 | 110053310 | E067 | 47155 |
chr9 | 110052265 | 110052620 | E068 | 46180 |
chr9 | 110052756 | 110052813 | E068 | 46671 |
chr9 | 110050453 | 110050504 | E069 | 44368 |
chr9 | 110050551 | 110050703 | E069 | 44466 |
chr9 | 110050906 | 110051244 | E069 | 44821 |
chr9 | 110052022 | 110052149 | E069 | 45937 |
chr9 | 110052265 | 110052620 | E069 | 46180 |
chr9 | 110052756 | 110052813 | E069 | 46671 |
chr9 | 110053240 | 110053310 | E069 | 47155 |
chr9 | 110055220 | 110055501 | E069 | 49135 |
chr9 | 110055593 | 110055657 | E069 | 49508 |
chr9 | 109989871 | 109991015 | E070 | -15070 |
chr9 | 109991045 | 109991232 | E070 | -14853 |
chr9 | 109991353 | 109992227 | E070 | -13858 |
chr9 | 110052022 | 110052149 | E071 | 45937 |
chr9 | 110052265 | 110052620 | E071 | 46180 |
chr9 | 110052756 | 110052813 | E071 | 46671 |
chr9 | 110053240 | 110053310 | E071 | 47155 |
chr9 | 110055220 | 110055501 | E071 | 49135 |
chr9 | 110055593 | 110055657 | E071 | 49508 |
chr9 | 110052265 | 110052620 | E072 | 46180 |
chr9 | 110052756 | 110052813 | E072 | 46671 |
chr9 | 110052265 | 110052620 | E073 | 46180 |
chr9 | 110052022 | 110052149 | E074 | 45937 |
chr9 | 110052265 | 110052620 | E074 | 46180 |
chr9 | 110052756 | 110052813 | E074 | 46671 |
chr9 | 110053240 | 110053310 | E074 | 47155 |
chr9 | 110055220 | 110055501 | E074 | 49135 |
chr9 | 110055593 | 110055657 | E074 | 49508 |
chr9 | 110055687 | 110055731 | E074 | 49602 |
chr9 | 109989871 | 109991015 | E081 | -15070 |
chr9 | 109991045 | 109991232 | E081 | -14853 |
chr9 | 109991353 | 109992227 | E081 | -13858 |
chr9 | 109992519 | 109992569 | E081 | -13516 |
chr9 | 109989871 | 109991015 | E082 | -15070 |
chr9 | 109991045 | 109991232 | E082 | -14853 |
chr9 | 109991353 | 109992227 | E082 | -13858 |
chr9 | 110055033 | 110055155 | E082 | 48948 |
chr9 | 110055593 | 110055657 | E082 | 49508 |
chr9 | 110055687 | 110055731 | E082 | 49602 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr9 | 110044267 | 110047386 | E067 | 38182 |
chr9 | 110047399 | 110048128 | E067 | 41314 |
chr9 | 110044267 | 110047386 | E068 | 38182 |
chr9 | 110047399 | 110048128 | E068 | 41314 |
chr9 | 110044267 | 110047386 | E069 | 38182 |
chr9 | 110047399 | 110048128 | E069 | 41314 |
chr9 | 110044267 | 110047386 | E070 | 38182 |
chr9 | 110047399 | 110048128 | E070 | 41314 |
chr9 | 110044267 | 110047386 | E071 | 38182 |
chr9 | 110044267 | 110047386 | E072 | 38182 |
chr9 | 110047399 | 110048128 | E072 | 41314 |
chr9 | 110044267 | 110047386 | E073 | 38182 |
chr9 | 110047399 | 110048128 | E073 | 41314 |
chr9 | 110044267 | 110047386 | E074 | 38182 |
chr9 | 110044267 | 110047386 | E081 | 38182 |
chr9 | 110047399 | 110048128 | E081 | 41314 |
chr9 | 110044267 | 110047386 | E082 | 38182 |
chr9 | 110047399 | 110048128 | E082 | 41314 |