rs13239910

Homo sapiens
T>C / T>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0308 (9213/29886,GnomAD)
G=0279 (8150/29118,TOPMED)
G=0160 (802/5008,1000G)
G=0405 (1562/3854,ALSPAC)
G=0402 (1489/3708,TWINSUK)
chr7:124438555 (GRCh38.p7) (7q31.33)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.124438555T>C
GRCh38.p7 chr 7NC_000007.14:g.124438555T>G
GRCh37.p13 chr 7NC_000007.13:g.124078609T>C
GRCh37.p13 chr 7NC_000007.13:g.124078609T>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.920G=0.080
1000GenomesAmericanSub694T=0.780G=0.220
1000GenomesEast AsianSub1008T=0.998G=0.002
1000GenomesEuropeSub1006T=0.552G=0.448
1000GenomesGlobalStudy-wide5008T=0.840G=0.160
1000GenomesSouth AsianSub978T=0.900G=0.100
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.595G=0.405
The Genome Aggregation DatabaseAfricanSub8720T=0.855C=0.000
The Genome Aggregation DatabaseAmericanSub838T=0.770C=0.00,
The Genome Aggregation DatabaseEast AsianSub1574T=0.997C=0.000
The Genome Aggregation DatabaseEuropeSub18452T=0.586C=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29886T=0.691C=0.000
The Genome Aggregation DatabaseOtherSub302T=0.590C=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.720G=0.279
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.598G=0.402
PMID Title Author Journal
21703634A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.Wang KSJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs132399107.54E-05alcohol dependence21703634

eQTL of rs13239910 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13239910 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.