SNP Detail Info-rs13259667

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

LOC105375909 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0057 (1730/29934,GnomAD)
A=0044 (1308/29118,TOPMED)
A=0059 (295/5008,1000G)
A=0077 (297/3854,ALSPAC)
A=0077 (287/3708,TWINSUK)

Position: chr8:77413649 (GRCh38.p7) (8q21.13)

Phenotype: AD

Dataset:

GWASCatalog

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 8	NC_000008.11:g.77413649G>A
GRCh37.p13 chr 8	NC_000008.10:g.78325885G>A

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105375909 transcript	XR_001745963.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.983	A=0.017
1000Genomes	American	Sub	694	G=0.930	A=0.070
1000Genomes	East Asian	Sub	1008	G=0.927	A=0.073
1000Genomes	Europe	Sub	1006	G=0.933	A=0.067
1000Genomes	Global	Study-wide	5008	G=0.941	A=0.059
1000Genomes	South Asian	Sub	978	G=0.910	A=0.090
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.923	A=0.077
The Genome Aggregation Database	African	Sub	8726	G=0.977	A=0.023
The Genome Aggregation Database	American	Sub	838	G=0.940	A=0.060
The Genome Aggregation Database	East Asian	Sub	1618	G=0.922	A=0.078
The Genome Aggregation Database	Europe	Sub	18450	G=0.927	A=0.072
The Genome Aggregation Database	Global	Study-wide	29934	G=0.942	A=0.057
The Genome Aggregation Database	Other	Sub	302	G=0.950	A=0.050
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.955	A=0.044
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.923	A=0.077

PMID	Title	Author	Journal
23942779	A genome-wide association study of behavioral disinhibition.	McGue M	Behav Genet

SNP ID	p-value	Traits	Study
rs13259667	8E-06	alcohol dependence	23942779

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs13259667