SNP Detail Info-rs13271637

Organism: Homo sapiens

Alleles: G>A / G>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0268 (8027/29930,GnomAD)
A=0220 (6418/29118,TOPMED)
A=0169 (845/5008,1000G)
A=0295 (1136/3854,ALSPAC)
A=0311 (1153/3708,TWINSUK)

Position: chr8:15500300 (GRCh38.p7) (8p22)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.871	A=0.129
1000Genomes	American	Sub	694	G=0.760	A=0.240
1000Genomes	East Asian	Sub	1008	G=0.905	A=0.095
1000Genomes	Europe	Sub	1006	G=0.706	A=0.294
1000Genomes	Global	Study-wide	5008	G=0.831	A=0.169
1000Genomes	South Asian	Sub	978	G=0.880	A=0.120
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.705	A=0.295
The Genome Aggregation Database	African	Sub	8706	G=0.832	A=0.168
The Genome Aggregation Database	American	Sub	838	G=0.780	A=0.220
The Genome Aggregation Database	East Asian	Sub	1612	G=0.922	A=0.078
The Genome Aggregation Database	Europe	Sub	18472	G=0.664	A=0.335
The Genome Aggregation Database	Global	Study-wide	29930	G=0.731	A=0.268
The Genome Aggregation Database	Other	Sub	302	G=0.800	A=0.200
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.779	A=0.220
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.689	A=0.311

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs13271637	0.00014	alcohol dependence(early age of onset)	20201924
rs13271637	0.00065	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs13271637