rs13279103

Homo sapiens
T>A / T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0127 (3812/29958,GnomAD)
C=0140 (4096/29118,TOPMED)
C=0175 (874/5008,1000G)
C=0060 (231/3854,ALSPAC)
C=0048 (179/3708,TWINSUK)
chr8:100801569 (GRCh38.p7) (8q22.3)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.100801569T>A
GRCh38.p7 chr 8NC_000008.11:g.100801569T>C
GRCh37.p13 chr 8NC_000008.10:g.101813797T>A
GRCh37.p13 chr 8NC_000008.10:g.101813797T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.756C=0.244
1000GenomesAmericanSub694T=0.800C=0.200
1000GenomesEast AsianSub1008T=0.711C=0.289
1000GenomesEuropeSub1006T=0.948C=0.052
1000GenomesGlobalStudy-wide5008T=0.825C=0.175
1000GenomesSouth AsianSub978T=0.930C=0.070
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.940C=0.060
The Genome Aggregation DatabaseAfricanSub8714T=0.763C=0.237
The Genome Aggregation DatabaseAmericanSub836T=0.800C=0.20,
The Genome Aggregation DatabaseEast AsianSub1610T=0.688C=0.312
The Genome Aggregation DatabaseEuropeSub18496T=0.942C=0.057
The Genome Aggregation DatabaseGlobalStudy-wide29958T=0.872C=0.127
The Genome Aggregation DatabaseOtherSub302T=0.950C=0.05,
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.859C=0.140
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.952C=0.048
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs132791039.02E-05alcohol consumption23743675

eQTL of rs13279103 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13279103 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.