rs13279512

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0241 (7240/29932,GnomAD)
A=0231 (6736/29118,TOPMED)
A=0252 (1261/5008,1000G)
chr8:61045943 (GRCh38.p7) (8q12.2)
OD
GWASCatalog
1   publication(s)
See rs on genome
9 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.61045943G>A
GRCh37.p13 chr 8NC_000008.10:g.61958502G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.802A=0.198
1000GenomesAmericanSub694G=0.790A=0.210
1000GenomesEast AsianSub1008G=0.768A=0.232
1000GenomesEuropeSub1006G=0.724A=0.276
1000GenomesGlobalStudy-wide5008G=0.748A=0.252
1000GenomesSouth AsianSub978G=0.650A=0.350
The Genome Aggregation DatabaseAfricanSub8714G=0.812A=0.188
The Genome Aggregation DatabaseAmericanSub838G=0.770A=0.230
The Genome Aggregation DatabaseEast AsianSub1616G=0.756A=0.244
The Genome Aggregation DatabaseEuropeSub18462G=0.733A=0.266
The Genome Aggregation DatabaseGlobalStudy-wide29932G=0.758A=0.241
The Genome Aggregation DatabaseOtherSub302G=0.680A=0.320
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.768A=0.231
PMID Title Author Journal
29478698Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans.Cheng ZBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs132795129E-07Opioid dependence29478698

eQTL of rs13279512 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13279512 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr86191636061916524E067-41978
chr86191658961916639E067-41863
chr86191667661916807E067-41695
chr86191684561917366E067-41136
chr86191742861917552E067-40950
chr86191759161917734E067-40768
chr86191787561917929E067-40573
chr86191801161918061E067-40441
chr86191815261919119E067-39383
chr86192467061924710E067-33792
chr86192473261924866E067-33636
chr86192490961924995E067-33507
chr86192505761927207E067-31295
chr86192743861927499E067-31003
chr86192758061927649E067-30853
chr86192771461927754E067-30748
chr86192784961927931E067-30571
chr86192793561927985E067-30517
chr86192807861928195E067-30307
chr86193219561932450E067-26052
chr86193247561933248E067-25254
chr86193336961933657E067-24845
chr86193572461937321E067-21181
chr86196614661967680E0677644
chr86196936161969859E06710859
chr86190879661909013E068-49489
chr86190906761909117E068-49385
chr86190912261909217E068-49285
chr86190922061909396E068-49106
chr86190969961910385E068-48117
chr86191052061911200E068-47302
chr86191123561911275E068-47227
chr86191133361911373E068-47129
chr86191154461912051E068-46451
chr86191636061916524E068-41978
chr86191658961916639E068-41863
chr86191667661916807E068-41695
chr86191801161918061E068-40441
chr86191815261919119E068-39383
chr86192467061924710E068-33792
chr86192473261924866E068-33636
chr86192490961924995E068-33507
chr86192505761927207E068-31295
chr86192743861927499E068-31003
chr86192758061927649E068-30853
chr86192771461927754E068-30748
chr86192784961927931E068-30571
chr86192793561927985E068-30517
chr86192807861928195E068-30307
chr86193219561932450E068-26052
chr86193247561933248E068-25254
chr86193336961933657E068-24845
chr86193446061934531E068-23971
chr86193463261934755E068-23747
chr86193485261935492E068-23010
chr86195026661950325E068-8177
chr86195036361950541E068-7961
chr86195061761950892E068-7610
chr86196614661967680E0687644
chr86196936161969859E06810859
chr86200632162006547E06847819
chr86200658062006675E06848078
chr86200670462006755E06848202
chr86190879661909013E069-49489
chr86190906761909117E069-49385
chr86190912261909217E069-49285
chr86190922061909396E069-49106
chr86191154461912051E069-46451
chr86191636061916524E069-41978
chr86191658961916639E069-41863
chr86191667661916807E069-41695
chr86191684561917366E069-41136
chr86191742861917552E069-40950
chr86191759161917734E069-40768
chr86191787561917929E069-40573
chr86191801161918061E069-40441
chr86191815261919119E069-39383
chr86192505761927207E069-31295
chr86192743861927499E069-31003
chr86192758061927649E069-30853
chr86192771461927754E069-30748
chr86192784961927931E069-30571
chr86192793561927985E069-30517
chr86192807861928195E069-30307
chr86193247561933248E069-25254
chr86193336961933657E069-24845
chr86193463261934755E069-23747
chr86193485261935492E069-23010
chr86195026661950325E069-8177
chr86195036361950541E069-7961
chr86200670462006755E06948202
chr86190879661909013E070-49489
chr86190906761909117E070-49385
chr86190912261909217E070-49285
chr86190922061909396E070-49106
chr86190969961910385E070-48117
chr86191052061911200E070-47302
chr86191123561911275E070-47227
chr86191133361911373E070-47129
chr86191154461912051E070-46451
chr86191368761913795E070-44707
chr86191421761914388E070-44114
chr86191636061916524E070-41978
chr86191658961916639E070-41863
chr86191667661916807E070-41695
chr86191684561917366E070-41136
chr86191742861917552E070-40950
chr86191759161917734E070-40768
chr86191951961919618E070-38884
chr86191982561919905E070-38597
chr86192003761920156E070-38346
chr86192015861920646E070-37856
chr86192106161921111E070-37391
chr86192253061922644E070-35858
chr86192267561922826E070-35676
chr86192330661923366E070-35136
chr86192350961923549E070-34953
chr86192447761924572E070-33930
chr86192467061924710E070-33792
chr86192473261924866E070-33636
chr86192490961924995E070-33507
chr86192505761927207E070-31295
chr86192904161930074E070-28428
chr86193032361930373E070-28129
chr86193042861930478E070-28024
chr86193065861930776E070-27726
chr86193078561930835E070-27667
chr86193247561933248E070-25254
chr86193336961933657E070-24845
chr86193418861934228E070-24274
chr86193446061934531E070-23971
chr86193463261934755E070-23747
chr86196936161969859E07010859
chr86198719861987238E07028696
chr86198748561987535E07028983
chr86198779261987845E07029290
chr86198789061987983E07029388
chr86198798761988037E07029485
chr86198804461988139E07029542
chr86198831761988438E07029815
chr86198884661989526E07030344
chr86199019061991179E07031688
chr86200632162006547E07047819
chr86200658062006675E07048078
chr86200670462006755E07048202
chr86200682062006870E07048318
chr86200688462006940E07048382
chr86190879661909013E071-49489
chr86190906761909117E071-49385
chr86190912261909217E071-49285
chr86190922061909396E071-49106
chr86190969961910385E071-48117
chr86191052061911200E071-47302
chr86191123561911275E071-47227
chr86191133361911373E071-47129
chr86191154461912051E071-46451
chr86191636061916524E071-41978
chr86191658961916639E071-41863
chr86191667661916807E071-41695
chr86192447761924572E071-33930
chr86192467061924710E071-33792
chr86192473261924866E071-33636
chr86192490961924995E071-33507
chr86192505761927207E071-31295
chr86192743861927499E071-31003
chr86192758061927649E071-30853
chr86192771461927754E071-30748
chr86192784961927931E071-30571
chr86192793561927985E071-30517
chr86192807861928195E071-30307
chr86193219561932450E071-26052
chr86193247561933248E071-25254
chr86193336961933657E071-24845
chr86193418861934228E071-24274
chr86193446061934531E071-23971
chr86193463261934755E071-23747
chr86193485261935492E071-23010
chr86193572461937321E071-21181
chr86194792561948043E071-10459
chr86194809561948232E071-10270
chr86195026661950325E071-8177
chr86195036361950541E071-7961
chr86195061761950892E071-7610
chr86196614661967680E0717644
chr86196936161969859E07110859
chr86200632162006547E07147819
chr86200658062006675E07148078
chr86200670462006755E07148202
chr86200682062006870E07148318
chr86200688462006940E07148382
chr86200711362007334E07148611
chr86190879661909013E072-49489
chr86190906761909117E072-49385
chr86190912261909217E072-49285
chr86190922061909396E072-49106
chr86190969961910385E072-48117
chr86191052061911200E072-47302
chr86191658961916639E072-41863
chr86191667661916807E072-41695
chr86191684561917366E072-41136
chr86191742861917552E072-40950
chr86191815261919119E072-39383
chr86192505761927207E072-31295
chr86192743861927499E072-31003
chr86192758061927649E072-30853
chr86192771461927754E072-30748
chr86192784961927931E072-30571
chr86192793561927985E072-30517
chr86192807861928195E072-30307
chr86193219561932450E072-26052
chr86193247561933248E072-25254
chr86193336961933657E072-24845
chr86193446061934531E072-23971
chr86193463261934755E072-23747
chr86193485261935492E072-23010
chr86195026661950325E072-8177
chr86195036361950541E072-7961
chr86196614661967680E0727644
chr86190879661909013E073-49489
chr86190906761909117E073-49385
chr86190912261909217E073-49285
chr86190922061909396E073-49106
chr86191636061916524E073-41978
chr86191658961916639E073-41863
chr86191667661916807E073-41695
chr86191684561917366E073-41136
chr86191815261919119E073-39383
chr86192473261924866E073-33636
chr86192490961924995E073-33507
chr86192505761927207E073-31295
chr86193336961933657E073-24845
chr86190879661909013E074-49489
chr86190906761909117E074-49385
chr86190912261909217E074-49285
chr86190922061909396E074-49106
chr86191636061916524E074-41978
chr86191658961916639E074-41863
chr86191667661916807E074-41695
chr86191684561917366E074-41136
chr86191787561917929E074-40573
chr86191801161918061E074-40441
chr86191815261919119E074-39383
chr86192505761927207E074-31295
chr86192743861927499E074-31003
chr86192758061927649E074-30853
chr86192771461927754E074-30748
chr86192784961927931E074-30571
chr86192793561927985E074-30517
chr86192807861928195E074-30307
chr86193219561932450E074-26052
chr86193247561933248E074-25254
chr86193463261934755E074-23747
chr86193572461937321E074-21181
chr86195036361950541E074-7961
chr86195061761950892E074-7610
chr86196257961962637E0744077
chr86196283661962901E0744334
chr86196298161963035E0744479
chr86196614661967680E0747644
chr86196936161969859E07410859
chr86200632162006547E07447819
chr86200658062006675E07448078
chr86200670462006755E07448202
chr86200682062006870E07448318
chr86200688462006940E07448382
chr86190912261909217E081-49285
chr86190922061909396E081-49106
chr86190969961910385E081-48117
chr86191052061911200E081-47302
chr86191123561911275E081-47227
chr86191133361911373E081-47129
chr86191667661916807E081-41695
chr86191684561917366E081-41136
chr86191742861917552E081-40950
chr86191759161917734E081-40768
chr86191787561917929E081-40573
chr86191801161918061E081-40441
chr86191815261919119E081-39383
chr86191951961919618E081-38884
chr86191982561919905E081-38597
chr86192003761920156E081-38346
chr86192015861920646E081-37856
chr86192880961928913E081-29589
chr86192904161930074E081-28428
chr86193032361930373E081-28129
chr86193042861930478E081-28024
chr86193065861930776E081-27726
chr86193078561930835E081-27667
chr86193102961931079E081-27423
chr86193108561931137E081-27365
chr86193446061934531E081-23971
chr86193485261935492E081-23010
chr86193572461937321E081-21181
chr86197936461979622E08120862
chr86197963561979731E08121133
chr86198831761988438E08129815
chr86198884661989526E08130344
chr86199019061991179E08131688
chr86190906761909117E082-49385
chr86190912261909217E082-49285
chr86190922061909396E082-49106
chr86190969961910385E082-48117
chr86191052061911200E082-47302
chr86191123561911275E082-47227
chr86191133361911373E082-47129
chr86191154461912051E082-46451
chr86191951961919618E082-38884
chr86191982561919905E082-38597
chr86192003761920156E082-38346
chr86192015861920646E082-37856
chr86192880961928913E082-29589
chr86192904161930074E082-28428
chr86193032361930373E082-28129
chr86193042861930478E082-28024
chr86193065861930776E082-27726
chr86193078561930835E082-27667
chr86193463261934755E082-23747
chr86196936161969859E08210859
chr86197936461979622E08220862
chr86198884661989526E08230344
chr86199019061991179E08231688










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr86193557561935660E067-22842
chr86193557561935660E068-22842
chr86193557561935660E069-22842
chr86193557561935660E070-22842
chr86193557561935660E071-22842
chr86193557561935660E072-22842
chr86193557561935660E073-22842
chr86193557561935660E074-22842
chr86193557561935660E082-22842