rs13285107

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0154 (4630/29908,GnomAD)
T=0155 (4536/29118,TOPMED)
T=0098 (492/5008,1000G)
T=0140 (541/3854,ALSPAC)
T=0164 (607/3708,TWINSUK)
chr9:93118772 (GRCh38.p7) (9q22.31)
AD
GWASdb2
1   publication(s)
See rs on genome
307 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.93118772C>T
GRCh37.p13 chr 9NC_000009.11:g.95881054C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.803T=0.197
1000GenomesAmericanSub694C=0.940T=0.060
1000GenomesEast AsianSub1008C=0.995T=0.005
1000GenomesEuropeSub1006C=0.852T=0.148
1000GenomesGlobalStudy-wide5008C=0.902T=0.098
1000GenomesSouth AsianSub978C=0.960T=0.040
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.860T=0.140
The Genome Aggregation DatabaseAfricanSub8694C=0.814T=0.186
The Genome Aggregation DatabaseAmericanSub838C=0.920T=0.080
The Genome Aggregation DatabaseEast AsianSub1618C=0.995T=0.005
The Genome Aggregation DatabaseEuropeSub18456C=0.843T=0.156
The Genome Aggregation DatabaseGlobalStudy-wide29908C=0.845T=0.154
The Genome Aggregation DatabaseOtherSub302C=0.850T=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.844T=0.155
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.836T=0.164
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs132851070.000569alcohol dependence20201924

eQTL of rs13285107 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr9:95881054NINJ1ENSG00000131669.5C>T2.4650e-11-15516Cerebellar_Hemisphere
Chr9:95881054NINJ1ENSG00000131669.5C>T6.4831e-3-15516Caudate_basal_ganglia

meQTL of rs13285107 in Fetal Brain

Probe ID Position Gene beta p-value
cg13802506chr9:95888884NINJ1-0.0974181840873518.5267e-9

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr99586219695862565E067-18489
chr99587094295871769E067-9285
chr99588178495883208E067730
chr99589074895890960E0679694
chr99589098595891162E0679931
chr99589119895891358E06710144
chr99589143095892042E06710376
chr99589207295892145E06711018
chr99589222895892699E06711174
chr99589272795892882E06711673
chr99589289095892977E06711836
chr99589301695893821E06711962
chr99589385495893985E06712800
chr99589406195894207E06713007
chr99589427595894319E06713221
chr99589438495894469E06713330
chr99589779595898030E06716741
chr99589830895898670E06717254
chr99590611395907260E06725059
chr99591780495917899E06736750
chr99591791195917972E06736857
chr99591799995918049E06736945
chr99591807495919129E06737020
chr99583448995834549E068-46505
chr99583460995835161E068-45893
chr99586149595862140E068-18914
chr99586219695862565E068-18489
chr99587896495879033E068-2021
chr99587905595879249E068-1805
chr99588882195889017E0687767
chr99588902995890273E0687975
chr99589033095890397E0689276
chr99589042095890552E0689366
chr99589074895890960E0689694
chr99589098595891162E0689931
chr99589119895891358E06810144
chr99589143095892042E06810376
chr99589207295892145E06811018
chr99589222895892699E06811174
chr99589272795892882E06811673
chr99589289095892977E06811836
chr99589301695893821E06811962
chr99589385495893985E06812800
chr99589406195894207E06813007
chr99589427595894319E06813221
chr99589438495894469E06813330
chr99589779595898030E06816741
chr99589830895898670E06817254
chr99589892595899497E06817871
chr99589969295900324E06818638
chr99590611395907260E06825059
chr99590729495907410E06826240
chr99591780495917899E06836750
chr99591791195917972E06836857
chr99591807495919129E06837020
chr99592185395922754E06840799
chr99592404395924807E06842989
chr99592502995925116E06843975
chr99592515395925207E06844099
chr99592527895925328E06844224
chr99583460995835161E069-45893
chr99583533995835379E069-45675
chr99585514395855272E069-25782
chr99586149595862140E069-18914
chr99586219695862565E069-18489
chr99587094295871769E069-9285
chr99587183895871911E069-9143
chr99588178495883208E069730
chr99588838595888817E0697331
chr99588882195889017E0697767
chr99588902995890273E0697975
chr99589033095890397E0699276
chr99589042095890552E0699366
chr99589074895890960E0699694
chr99589098595891162E0699931
chr99589119895891358E06910144
chr99589143095892042E06910376
chr99589207295892145E06911018
chr99589222895892699E06911174
chr99589272795892882E06911673
chr99589289095892977E06911836
chr99589301695893821E06911962
chr99589385495893985E06912800
chr99589406195894207E06913007
chr99589427595894319E06913221
chr99589438495894469E06913330
chr99589779595898030E06916741
chr99589830895898670E06917254
chr99589892595899497E06917871
chr99589957695899646E06918522
chr99589969295900324E06918638
chr99590041895900476E06919364
chr99590050195900989E06919447
chr99590729495907410E06926240
chr99591780495917899E06936750
chr99591791195917972E06936857
chr99591799995918049E06936945
chr99591807495919129E06937020
chr99592502995925116E06943975
chr99583448995834549E070-46505
chr99583460995835161E070-45893
chr99583533995835379E070-45675
chr99583582695835876E070-45178
chr99583597695836054E070-45000
chr99583610895836178E070-44876
chr99586149595862140E070-18914
chr99586219695862565E070-18489
chr99589830895898670E07017254
chr99590611395907260E07025059
chr99590729495907410E07026240
chr99591799995918049E07036945
chr99591807495919129E07037020
chr99592299795923192E07041943
chr99592345095923490E07042396
chr99592353995923626E07042485
chr99592404395924807E07042989
chr99592502995925116E07043975
chr99592515395925207E07044099
chr99592527895925328E07044224
chr99592547195925584E07044417
chr99592558595925692E07044531
chr99583448995834549E071-46505
chr99583460995835161E071-45893
chr99583533995835379E071-45675
chr99584335095843677E071-37377
chr99585514395855272E071-25782
chr99586149595862140E071-18914
chr99586219695862565E071-18489
chr99587726595877656E071-3398
chr99588178495883208E071730
chr99588335595883428E0712301
chr99588346595883653E0712411
chr99588365595884060E0712601
chr99588422695884552E0713172
chr99588466895884723E0713614
chr99588477495884882E0713720
chr99588488695885041E0713832
chr99588838595888817E0717331
chr99588882195889017E0717767
chr99588902995890273E0717975
chr99589033095890397E0719276
chr99589098595891162E0719931
chr99589119895891358E07110144
chr99589143095892042E07110376
chr99589207295892145E07111018
chr99589222895892699E07111174
chr99589272795892882E07111673
chr99589289095892977E07111836
chr99589301695893821E07111962
chr99589779595898030E07116741
chr99589830895898670E07117254
chr99589957695899646E07118522
chr99589969295900324E07118638
chr99590041895900476E07119364
chr99590050195900989E07119447
chr99590611395907260E07125059
chr99590729495907410E07126240
chr99591780495917899E07136750
chr99591791195917972E07136857
chr99591799995918049E07136945
chr99592404395924807E07142989
chr99583460995835161E072-45893
chr99586219695862565E072-18489
chr99587896495879033E072-2021
chr99587905595879249E072-1805
chr99588724895887306E0726194
chr99589042095890552E0729366
chr99589074895890960E0729694
chr99589098595891162E0729931
chr99589119895891358E07210144
chr99589143095892042E07210376
chr99589207295892145E07211018
chr99589222895892699E07211174
chr99589272795892882E07211673
chr99589289095892977E07211836
chr99589301695893821E07211962
chr99589385495893985E07212800
chr99589406195894207E07213007
chr99589427595894319E07213221
chr99589438495894469E07213330
chr99589779595898030E07216741
chr99589830895898670E07217254
chr99589892595899497E07217871
chr99589957695899646E07218522
chr99589969295900324E07218638
chr99590041895900476E07219364
chr99590050195900989E07219447
chr99590611395907260E07225059
chr99591662795916948E07235573
chr99591780495917899E07236750
chr99591791195917972E07236857
chr99591799995918049E07236945
chr99591807495919129E07237020
chr99592185395922754E07240799
chr99583427795834351E073-46703
chr99583448995834549E073-46505
chr99583460995835161E073-45893
chr99583533995835379E073-45675
chr99586149595862140E073-18914
chr99586219695862565E073-18489
chr99586982695870060E073-10994
chr99588178495883208E073730
chr99588882195889017E0737767
chr99588902995890273E0737975
chr99589033095890397E0739276
chr99589042095890552E0739366
chr99589074895890960E0739694
chr99589098595891162E0739931
chr99589119895891358E07310144
chr99589143095892042E07310376
chr99589207295892145E07311018
chr99589222895892699E07311174
chr99589272795892882E07311673
chr99589289095892977E07311836
chr99589301695893821E07311962
chr99589385495893985E07312800
chr99589779595898030E07316741
chr99589830895898670E07317254
chr99589957695899646E07318522
chr99589969295900324E07318638
chr99590041895900476E07319364
chr99590050195900989E07319447
chr99590611395907260E07325059
chr99591780495917899E07336750
chr99591791195917972E07336857
chr99591799995918049E07336945
chr99591807495919129E07337020
chr99591915495919271E07338100
chr99583448995834549E074-46505
chr99583460995835161E074-45893
chr99583533995835379E074-45675
chr99585472295855142E074-25912
chr99585514395855272E074-25782
chr99586149595862140E074-18914
chr99586219695862565E074-18489
chr99586982695870060E074-10994
chr99587014595870466E074-10588
chr99588882195889017E0747767
chr99588902995890273E0747975
chr99589033095890397E0749276
chr99589042095890552E0749366
chr99589074895890960E0749694
chr99589098595891162E0749931
chr99589119895891358E07410144
chr99589143095892042E07410376
chr99589207295892145E07411018
chr99589222895892699E07411174
chr99589272795892882E07411673
chr99589289095892977E07411836
chr99589301695893821E07411962
chr99589779595898030E07416741
chr99589830895898670E07417254
chr99590041895900476E07419364
chr99590611395907260E07425059
chr99590729495907410E07426240
chr99591780495917899E07436750
chr99591791195917972E07436857
chr99591799995918049E07436945
chr99591807495919129E07437020
chr99592185395922754E07440799
chr99592299795923192E07441943
chr99592404395924807E07442989
chr99588882195889017E0817767
chr99589779595898030E08116741
chr99589830895898670E08117254
chr99589892595899497E08117871
chr99590611395907260E08125059
chr99591662795916948E08135573
chr99591709595917202E08136041
chr99591739095917440E08136336
chr99591780495917899E08136750
chr99591791195917972E08136857
chr99591799995918049E08136945
chr99591807495919129E08137020
chr99591915495919271E08138100
chr99591964995919803E08138595
chr99592185395922754E08140799
chr99592299795923192E08141943
chr99592345095923490E08142396
chr99592353995923626E08142485
chr99592404395924807E08142989
chr99592502995925116E08143975
chr99592515395925207E08144099
chr99592527895925328E08144224
chr99588902995890273E0827975
chr99589033095890397E0829276
chr99589042095890552E0829366
chr99589074895890960E0829694
chr99589098595891162E0829931
chr99589119895891358E08210144
chr99589779595898030E08216741
chr99589830895898670E08217254
chr99590611395907260E08225059
chr99591662795916948E08235573
chr99591709595917202E08236041
chr99591739095917440E08236336
chr99591780495917899E08236750
chr99591791195917972E08236857
chr99591799995918049E08236945
chr99591807495919129E08237020
chr99592185395922754E08240799
chr99592345095923490E08242396
chr99592353995923626E08242485
chr99592404395924807E08242989
chr99592502995925116E08243975
chr99592515395925207E08244099
chr99592527895925328E08244224