rs13285597

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0114 (3433/29954,GnomAD)
T=0096 (2812/29118,TOPMED)
T=0119 (594/5008,1000G)
T=0106 (410/3854,ALSPAC)
T=0113 (420/3708,TWINSUK)
chr9:14483656 (GRCh38.p7) (9p22.3)
AD
GWASdb2
1   publication(s)
See rs on genome
91 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.14483656C>T
GRCh37.p13 chr 9NC_000009.11:g.14483654C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.911T=0.089
1000GenomesAmericanSub694C=0.940T=0.060
1000GenomesEast AsianSub1008C=0.869T=0.131
1000GenomesEuropeSub1006C=0.878T=0.122
1000GenomesGlobalStudy-wide5008C=0.881T=0.119
1000GenomesSouth AsianSub978C=0.820T=0.180
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.894T=0.106
The Genome Aggregation DatabaseAfricanSub8724C=0.898T=0.102
The Genome Aggregation DatabaseAmericanSub838C=0.940T=0.060
The Genome Aggregation DatabaseEast AsianSub1612C=0.859T=0.141
The Genome Aggregation DatabaseEuropeSub18478C=0.880T=0.119
The Genome Aggregation DatabaseGlobalStudy-wide29954C=0.885T=0.114
The Genome Aggregation DatabaseOtherSub302C=0.820T=0.180
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.903T=0.096
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.887T=0.113
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs132855973.72E-05alcohol consumption23743675

eQTL of rs13285597 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13285597 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr91443702914438420E068-45234
chr91448279514483182E068-472
chr91451551414516258E06831860
chr91443702914438420E069-45234
chr91450071314501136E06917059
chr91443702914438420E070-45234
chr91443843214438587E070-45067
chr91443867514438965E070-44689
chr91443930014439364E070-44290
chr91444120214441416E070-42238
chr91446540014466861E070-16793
chr91448279514483182E070-472
chr91451531514515414E07031661
chr91451542214515477E07031768
chr91451551414516258E07031860
chr91451637014516464E07032716
chr91451651914516580E07032865
chr91451669314517143E07033039
chr91451719114517508E07033537
chr91451788514518015E07034231
chr91452095414521061E07037300
chr91452911914529268E07045465
chr91452933214529414E07045678
chr91452981814530069E07046164
chr91453008414530134E07046430
chr91453018314530237E07046529
chr91453024114530328E07046587
chr91453215714532347E07048503
chr91453236114533049E07048707
chr91453332114533536E07049667
chr91453356314533636E07049909
chr91443633814436638E071-47016
chr91443665914436771E071-46883
chr91443681614436860E071-46794
chr91443702914438420E071-45234
chr91443702914438420E073-45234
chr91447889714479053E074-4601
chr91447934314479421E074-4233
chr91453041614530816E07446762
chr91443702914438420E081-45234
chr91443843214438587E081-45067
chr91443867514438965E081-44689
chr91444120214441416E081-42238
chr91445060714450669E081-32985
chr91445086414451049E081-32605
chr91445109114451143E081-32511
chr91445256014452893E081-30761
chr91445300114453068E081-30586
chr91445324014453586E081-30068
chr91451551414516258E08131860
chr91451637014516464E08132716
chr91451651914516580E08132865
chr91451669314517143E08133039
chr91451719114517508E08133537
chr91453041614530816E08146762
chr91453098014531089E08147326
chr91453112014531726E08147466
chr91453176114531897E08148107
chr91453194314532111E08148289
chr91453215714532347E08148503
chr91453236114533049E08148707
chr91443447514434610E082-49044
chr91443466014434801E082-48853
chr91443702914438420E082-45234
chr91443843214438587E082-45067
chr91443867514438965E082-44689
chr91443930014439364E082-44290
chr91444009214440405E082-43249
chr91444044314440497E082-43157
chr91444057014440652E082-43002
chr91444068914440739E082-42915
chr91444077614440826E082-42828
chr91444106714441121E082-42533
chr91444120214441416E082-42238
chr91445324014453586E082-30068
chr91451551414516258E08231860
chr91451637014516464E08232716
chr91451651914516580E08232865
chr91451669314517143E08233039
chr91451719114517508E08233537
chr91451788514518015E08234231
chr91452933214529414E08245678
chr91452981814530069E08246164
chr91453008414530134E08246430
chr91453018314530237E08246529
chr91453024114530328E08246587
chr91453176114531897E08248107
chr91453194314532111E08248289
chr91453215714532347E08248503
chr91453236114533049E08248707
chr91453332114533536E08249667