rs13299701

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0115 (3460/29976,GnomAD)
T=0097 (2833/29118,TOPMED)
T=0119 (596/5008,1000G)
T=0106 (408/3854,ALSPAC)
T=0114 (423/3708,TWINSUK)
chr9:14482458 (GRCh38.p7) (9p22.3)
AD
GWASdb2
1   publication(s)
See rs on genome
85 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.14482458C>T
GRCh37.p13 chr 9NC_000009.11:g.14482456C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.910T=0.090
1000GenomesAmericanSub694C=0.940T=0.060
1000GenomesEast AsianSub1008C=0.869T=0.131
1000GenomesEuropeSub1006C=0.879T=0.121
1000GenomesGlobalStudy-wide5008C=0.881T=0.119
1000GenomesSouth AsianSub978C=0.820T=0.180
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.894T=0.106
The Genome Aggregation DatabaseAfricanSub8726C=0.896T=0.104
The Genome Aggregation DatabaseAmericanSub838C=0.940T=0.060
The Genome Aggregation DatabaseEast AsianSub1618C=0.857T=0.143
The Genome Aggregation DatabaseEuropeSub18492C=0.880T=0.119
The Genome Aggregation DatabaseGlobalStudy-wide29976C=0.884T=0.115
The Genome Aggregation DatabaseOtherSub302C=0.820T=0.180
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.902T=0.097
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.886T=0.114
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs132997013.63E-05alcohol consumption23743675

eQTL of rs13299701 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13299701 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr91443702914438420E068-44036
chr91448279514483182E068339
chr91451551414516258E06833058
chr91443702914438420E069-44036
chr91450071314501136E06918257
chr91443702914438420E070-44036
chr91443843214438587E070-43869
chr91443867514438965E070-43491
chr91443930014439364E070-43092
chr91444120214441416E070-41040
chr91446540014466861E070-15595
chr91448279514483182E070339
chr91451531514515414E07032859
chr91451542214515477E07032966
chr91451551414516258E07033058
chr91451637014516464E07033914
chr91451651914516580E07034063
chr91451669314517143E07034237
chr91451719114517508E07034735
chr91451788514518015E07035429
chr91452095414521061E07038498
chr91452911914529268E07046663
chr91452933214529414E07046876
chr91452981814530069E07047362
chr91453008414530134E07047628
chr91453018314530237E07047727
chr91453024114530328E07047785
chr91453215714532347E07049701
chr91443633814436638E071-45818
chr91443665914436771E071-45685
chr91443681614436860E071-45596
chr91443702914438420E071-44036
chr91443702914438420E073-44036
chr91447889714479053E074-3403
chr91447934314479421E074-3035
chr91453041614530816E07447960
chr91443702914438420E081-44036
chr91443843214438587E081-43869
chr91443867514438965E081-43491
chr91444120214441416E081-41040
chr91445060714450669E081-31787
chr91445086414451049E081-31407
chr91445109114451143E081-31313
chr91445256014452893E081-29563
chr91445300114453068E081-29388
chr91445324014453586E081-28870
chr91451551414516258E08133058
chr91451637014516464E08133914
chr91451651914516580E08134063
chr91451669314517143E08134237
chr91451719114517508E08134735
chr91453041614530816E08147960
chr91453098014531089E08148524
chr91453112014531726E08148664
chr91453176114531897E08149305
chr91453194314532111E08149487
chr91453215714532347E08149701
chr91443447514434610E082-47846
chr91443466014434801E082-47655
chr91443702914438420E082-44036
chr91443843214438587E082-43869
chr91443867514438965E082-43491
chr91443930014439364E082-43092
chr91444009214440405E082-42051
chr91444044314440497E082-41959
chr91444057014440652E082-41804
chr91444068914440739E082-41717
chr91444077614440826E082-41630
chr91444106714441121E082-41335
chr91444120214441416E082-41040
chr91445324014453586E082-28870
chr91451551414516258E08233058
chr91451637014516464E08233914
chr91451651914516580E08234063
chr91451669314517143E08234237
chr91451719114517508E08234735
chr91451788514518015E08235429
chr91452933214529414E08246876
chr91452981814530069E08247362
chr91453008414530134E08247628
chr91453018314530237E08247727
chr91453024114530328E08247785
chr91453176114531897E08249305
chr91453194314532111E08249487
chr91453215714532347E08249701