rs13333707

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0303 (9061/29844,GnomAD)
T=0301 (1506/5008,1000G)
T=0359 (1382/3854,ALSPAC)
T=0337 (1248/3708,TWINSUK)
chr16:55084886 (GRCh38.p7) (16q12.2)
AD
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
7 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.55084886C>T
GRCh37.p13 chr 16NC_000016.9:g.55118798C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.809T=0.191
1000GenomesAmericanSub694C=0.700T=0.300
1000GenomesEast AsianSub1008C=0.629T=0.371
1000GenomesEuropeSub1006C=0.653T=0.347
1000GenomesGlobalStudy-wide5008C=0.699T=0.301
1000GenomesSouth AsianSub978C=0.670T=0.330
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.641T=0.359
The Genome Aggregation DatabaseAfricanSub8700C=0.810T=0.190
The Genome Aggregation DatabaseAmericanSub836C=0.730T=0.270
The Genome Aggregation DatabaseEast AsianSub1610C=0.639T=0.361
The Genome Aggregation DatabaseEuropeSub18396C=0.647T=0.352
The Genome Aggregation DatabaseGlobalStudy-wide29844C=0.696T=0.303
The Genome Aggregation DatabaseOtherSub302C=0.620T=0.380
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.663T=0.337
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs133337070.00058alcohol dependence20201924

eQTL of rs13333707 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13333707 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr165507043855070521E070-48277
chr165511584455116066E070-2732
chr165511584455116066E081-2732


Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr165509037255091543E068-27255
chr165509037255091543E069-27255
chr165509037255091543E071-27255
chr165509037255091543E072-27255
chr165509037255091543E073-27255
chr165509037255091543E074-27255
chr165509037255091543E082-27255