rs13338358

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0054 (1631/29986,GnomAD)
A=0083 (2441/29118,TOPMED)
A=0066 (333/5008,1000G)
A=0020 (76/3854,ALSPAC)
A=0022 (83/3708,TWINSUK)
chr16:23742877 (GRCh38.p7) (16p12.2)
AD
GWASdb2
1   publication(s)
See rs on genome
29 Enhancers around
4 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.23742877G>A
GRCh37.p13 chr 16NC_000016.9:g.23754198G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.825A=0.175
1000GenomesAmericanSub694G=0.970A=0.030
1000GenomesEast AsianSub1008G=0.982A=0.018
1000GenomesEuropeSub1006G=0.976A=0.024
1000GenomesGlobalStudy-wide5008G=0.934A=0.066
1000GenomesSouth AsianSub978G=0.960A=0.040
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.980A=0.020
The Genome Aggregation DatabaseAfricanSub8728G=0.854A=0.146
The Genome Aggregation DatabaseAmericanSub838G=0.970A=0.030
The Genome Aggregation DatabaseEast AsianSub1618G=0.978A=0.022
The Genome Aggregation DatabaseEuropeSub18500G=0.984A=0.015
The Genome Aggregation DatabaseGlobalStudy-wide29986G=0.945A=0.054
The Genome Aggregation DatabaseOtherSub302G=0.990A=0.010
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.916A=0.083
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.978A=0.022
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs133383580.000965alcohol dependence21314694

eQTL of rs13338358 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13338358 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr162379202823792197E06737830
chr162376561423765664E06911416
chr162379202823792197E06937830
chr162379256423792813E06938366
chr162379175723792022E07037559
chr162379202823792197E07037830
chr162379256423792813E07038366
chr162379722423797481E07043026
chr162379757223798039E07043374
chr162379810623798272E07043908
chr162379831223798947E07044114
chr162379897923799156E07044781
chr162380216923802412E07047971
chr162380345623803558E07049258
chr162380370223804078E07049504
chr162379175723792022E07137559
chr162379202823792197E07137830
chr162379256423792813E07138366
chr162379337023793437E07239172
chr162379175723792022E07437559
chr162379202823792197E07437830
chr162379256423792813E07438366
chr162372852623728576E081-25622
chr162372871423728858E081-25340
chr162373513123735850E081-18348
chr162373593923736010E081-18188
chr162375308923753503E081-695
chr162380197423802079E08147776
chr162380216923802412E08147971







Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr162376576823766793E06911570
chr162376576823766793E07011570
chr162376576823766793E07211570
chr162376576823766793E08211570