SNP Detail Info-rs13340561

Organism: Homo sapiens

Alleles: T>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0048 (1449/29932,GnomAD)
G=0068 (1997/29118,TOPMED)
G=0054 (271/5008,1000G)
G=0037 (143/3854,ALSPAC)
G=0032 (118/3708,TWINSUK)

Position: chr8:16201396 (GRCh38.p7) (8p22)

Phenotype: AD

Dataset:

GWASCatalog

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 1 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 8	NC_000008.11:g.16201396T>G
GRCh37.p13 chr 8	NC_000008.10:g.16058905T>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.873	G=0.127
1000Genomes	American	Sub	694	T=0.980	G=0.020
1000Genomes	East Asian	Sub	1008	T=0.989	G=0.011
1000Genomes	Europe	Sub	1006	T=0.975	G=0.025
1000Genomes	Global	Study-wide	5008	T=0.946	G=0.054
1000Genomes	South Asian	Sub	978	T=0.950	G=0.050
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.963	G=0.037
The Genome Aggregation Database	African	Sub	8720	T=0.893	G=0.107
The Genome Aggregation Database	American	Sub	838	T=0.960	G=0.040
The Genome Aggregation Database	East Asian	Sub	1620	T=0.993	G=0.007
The Genome Aggregation Database	Europe	Sub	18452	T=0.975	G=0.024
The Genome Aggregation Database	Global	Study-wide	29932	T=0.951	G=0.048
The Genome Aggregation Database	Other	Sub	302	T=0.950	G=0.050
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.931	G=0.068
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.968	G=0.032

PMID	Title	Author	Journal
26365420	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Mbarek H	Am J Med Genet B Neuropsychiatr Genet

SNP ID	p-value	Traits	Study
rs13340561	9E-06	alcohol dependence	26365420

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs13340561