| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 5 | NC_000005.10:g.122234922G>A |
| GRCh37.p13 chr 5 | NC_000005.9:g.121570617G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.660 | A=0.340 |
| 1000Genomes | American | Sub | 694 | G=0.980 | A=0.020 |
| 1000Genomes | East Asian | Sub | 1008 | G=1.000 | A=0.000 |
| 1000Genomes | Europe | Sub | 1006 | G=0.998 | A=0.002 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.907 | A=0.093 |
| 1000Genomes | South Asian | Sub | 978 | G=1.000 | A=0.000 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.999 | A=0.001 |
| The Genome Aggregation Database | African | Sub | 8640 | G=0.712 | A=0.288 |
| The Genome Aggregation Database | American | Sub | 826 | G=0.980 | A=0.020 |
| The Genome Aggregation Database | East Asian | Sub | 1606 | G=1.000 | A=0.000 |
| The Genome Aggregation Database | Europe | Sub | 18448 | G=0.999 | A=0.000 |
| The Genome Aggregation Database | Global | Study-wide | 29822 | G=0.915 | A=0.084 |
| The Genome Aggregation Database | Other | Sub | 302 | G=1.000 | A=0.000 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.871 | A=0.128 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=1.000 | A=0.000 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs13356385 | 8.85E-05 | alcohol dependence | 21314694 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr5 | 121599158 | 121599609 | E070 | 28541 |
| chr5 | 121599646 | 121599721 | E070 | 29029 |
| chr5 | 121600267 | 121600370 | E070 | 29650 |
| chr5 | 121531920 | 121531970 | E071 | -38647 |
| chr5 | 121534872 | 121535222 | E082 | -35395 |
| chr5 | 121536321 | 121536430 | E082 | -34187 |