rs13378851

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0152 (4434/29118,TOPMED)
T=0121 (3393/27950,GnomAD)
T=0118 (590/5008,1000G)
T=0104 (400/3854,ALSPAC)
T=0104 (385/3708,TWINSUK)
chr13:87100965 (GRCh38.p7) (13q31.2)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.87100965C>T
GRCh37.p13 chr 13NC_000013.10:g.87753220C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.785T=0.215
1000GenomesAmericanSub694C=0.910T=0.090
1000GenomesEast AsianSub1008C=0.965T=0.035
1000GenomesEuropeSub1006C=0.906T=0.094
1000GenomesGlobalStudy-wide5008C=0.882T=0.118
1000GenomesSouth AsianSub978C=0.880T=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.896T=0.104
The Genome Aggregation DatabaseAfricanSub8346C=0.787T=0.213
The Genome Aggregation DatabaseAmericanSub758C=0.930T=0.070
The Genome Aggregation DatabaseEast AsianSub1610C=0.954T=0.046
The Genome Aggregation DatabaseEuropeSub16938C=0.914T=0.085
The Genome Aggregation DatabaseGlobalStudy-wide27950C=0.878T=0.121
The Genome Aggregation DatabaseOtherSub298C=0.850T=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.847T=0.152
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.896T=0.104
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs133788510.000118alcohol consumption23743675

eQTL of rs13378851 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13378851 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr138778075187780970E07027531
chr138778099087781070E07027770
chr138778113987781194E07027919
chr138778136187781523E07028141
chr138778160987781698E07028389
chr138778189787782225E07028677
chr138778224887782420E07029028
chr138778273087782844E07029510
chr138778399687784117E07030776