rs13382644

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0259 (7746/29860,GnomAD)
A=0292 (8515/29118,TOPMED)
A=0250 (1250/5008,1000G)
A=0214 (825/3854,ALSPAC)
A=0211 (782/3708,TWINSUK)
chr2:160530218 (GRCh38.p7) (2q24.2)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.160530218G>A
GRCh37.p13 chr 2NC_000002.11:g.161386729G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.621A=0.379
1000GenomesAmericanSub694G=0.590A=0.410
1000GenomesEast AsianSub1008G=0.979A=0.021
1000GenomesEuropeSub1006G=0.774A=0.226
1000GenomesGlobalStudy-wide5008G=0.750A=0.250
1000GenomesSouth AsianSub978G=0.780A=0.220
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.786A=0.214
The Genome Aggregation DatabaseAfricanSub8688G=0.629A=0.371
The Genome Aggregation DatabaseAmericanSub834G=0.610A=0.390
The Genome Aggregation DatabaseEast AsianSub1616G=0.975A=0.025
The Genome Aggregation DatabaseEuropeSub18420G=0.780A=0.219
The Genome Aggregation DatabaseGlobalStudy-wide29860G=0.740A=0.259
The Genome Aggregation DatabaseOtherSub302G=0.640A=0.360
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.707A=0.292
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.789A=0.211
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs133826440.00021alcohol dependence20201924

eQTL of rs13382644 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13382644 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr2161348112161351258E067-35471
chr2161347524161347858E068-38871
chr2161347912161348070E068-38659
chr2161348112161351258E068-35471
chr2161348112161351258E069-35471
chr2161348112161351258E071-35471
chr2161348112161351258E072-35471
chr2161347912161348070E073-38659
chr2161348112161351258E073-35471
chr2161348112161351258E074-35471
chr2161348112161351258E082-35471