| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 2 | NC_000002.12:g.160530218G>A |
| GRCh37.p13 chr 2 | NC_000002.11:g.161386729G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.621 | A=0.379 |
| 1000Genomes | American | Sub | 694 | G=0.590 | A=0.410 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.979 | A=0.021 |
| 1000Genomes | Europe | Sub | 1006 | G=0.774 | A=0.226 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.750 | A=0.250 |
| 1000Genomes | South Asian | Sub | 978 | G=0.780 | A=0.220 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.786 | A=0.214 |
| The Genome Aggregation Database | African | Sub | 8688 | G=0.629 | A=0.371 |
| The Genome Aggregation Database | American | Sub | 834 | G=0.610 | A=0.390 |
| The Genome Aggregation Database | East Asian | Sub | 1616 | G=0.975 | A=0.025 |
| The Genome Aggregation Database | Europe | Sub | 18420 | G=0.780 | A=0.219 |
| The Genome Aggregation Database | Global | Study-wide | 29860 | G=0.740 | A=0.259 |
| The Genome Aggregation Database | Other | Sub | 302 | G=0.640 | A=0.360 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.707 | A=0.292 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.789 | A=0.211 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs13382644 | 0.00021 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
|---|---|---|---|---|
| chr2 | 161348112 | 161351258 | E067 | -35471 |
| chr2 | 161347524 | 161347858 | E068 | -38871 |
| chr2 | 161347912 | 161348070 | E068 | -38659 |
| chr2 | 161348112 | 161351258 | E068 | -35471 |
| chr2 | 161348112 | 161351258 | E069 | -35471 |
| chr2 | 161348112 | 161351258 | E071 | -35471 |
| chr2 | 161348112 | 161351258 | E072 | -35471 |
| chr2 | 161347912 | 161348070 | E073 | -38659 |
| chr2 | 161348112 | 161351258 | E073 | -35471 |
| chr2 | 161348112 | 161351258 | E074 | -35471 |
| chr2 | 161348112 | 161351258 | E082 | -35471 |