SNP Detail Info-rs13410476

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0362 (10816/29846,GnomAD)
A=0420 (12249/29118,TOPMED)
A=0397 (1989/5008,1000G)
A=0254 (979/3854,ALSPAC)
A=0248 (919/3708,TWINSUK)

Position: chr2:160554031 (GRCh38.p7) (2q24.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.160554031G>A
GRCh37.p13 chr 2	NC_000002.11:g.161410542G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.358	A=0.642
1000Genomes	American	Sub	694	G=0.550	A=0.450
1000Genomes	East Asian	Sub	1008	G=0.756	A=0.244
1000Genomes	Europe	Sub	1006	G=0.736	A=0.264
1000Genomes	Global	Study-wide	5008	G=0.603	A=0.397
1000Genomes	South Asian	Sub	978	G=0.670	A=0.330
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.746	A=0.254
The Genome Aggregation Database	African	Sub	8680	G=0.406	A=0.594
The Genome Aggregation Database	American	Sub	834	G=0.580	A=0.420
The Genome Aggregation Database	East Asian	Sub	1604	G=0.769	A=0.231
The Genome Aggregation Database	Europe	Sub	18426	G=0.737	A=0.262
The Genome Aggregation Database	Global	Study-wide	29846	G=0.637	A=0.362
The Genome Aggregation Database	Other	Sub	302	G=0.650	A=0.350
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.579	A=0.420
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.752	A=0.248

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs13410476	0.00012	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs13410476