rs1341797

Homo sapiens
G>A
LOC101929147 : Intron Variant
LOC107985192 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G==0345 (10339/29946,GnomAD)
G==0379 (11060/29118,TOPMED)
G==0477 (2391/5008,1000G)
G==0249 (958/3854,ALSPAC)
G==0235 (872/3708,TWINSUK)
chr1:119252510 (GRCh38.p7) (1p12)
AD
GWASdb2
1   publication(s)
See rs on genome
2 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.119252510G>A
GRCh37.p13 chr 1NC_000001.10:g.119795133G>A

Gene: LOC101929147, uncharacterized LOC101929147(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC101929147 transcript variant 2NR_125975.1:n.N/AIntron Variant
LOC101929147 transcript variant 1NR_125974.1:n.N/AGenic Downstream Transcript Variant
LOC101929147 transcript variant 3NR_125976.1:n.N/AGenic Downstream Transcript Variant
LOC101929147 transcript variant 4NR_125977.1:n.N/AGenic Downstream Transcript Variant

Gene: LOC107985192, uncharacterized LOC107985192(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC107985192 transcriptXR_001738199.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.525A=0.475
1000GenomesAmericanSub694G=0.330A=0.670
1000GenomesEast AsianSub1008G=0.787A=0.213
1000GenomesEuropeSub1006G=0.266A=0.734
1000GenomesGlobalStudy-wide5008G=0.477A=0.523
1000GenomesSouth AsianSub978G=0.410A=0.590
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.249A=0.751
The Genome Aggregation DatabaseAfricanSub8700G=0.502A=0.498
The Genome Aggregation DatabaseAmericanSub838G=0.350A=0.650
The Genome Aggregation DatabaseEast AsianSub1616G=0.775A=0.225
The Genome Aggregation DatabaseEuropeSub18494G=0.234A=0.765
The Genome Aggregation DatabaseGlobalStudy-wide29946G=0.345A=0.654
The Genome Aggregation DatabaseOtherSub298G=0.290A=0.710
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.379A=0.620
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.235A=0.765
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs13417970.0000695alcoholismpha002892
rs13417970.00007alcohol dependence20201924

eQTL of rs1341797 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1341797 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr1119844224119844284E08149091
chr1119844691119844946E08149558