SNP Detail Info-rs13418009

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0094 (2838/29974,GnomAD)
G=0130 (3796/29118,TOPMED)
G=0113 (565/5008,1000G)
G=0054 (208/3854,ALSPAC)
G=0057 (210/3708,TWINSUK)

Position: chr2:153416028 (GRCh38.p7) (2q23.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.153416028A>G
GRCh37.p13 chr 2	NC_000002.11:g.154272542A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.811	G=0.189
1000Genomes	American	Sub	694	A=0.930	G=0.070
1000Genomes	East Asian	Sub	1008	A=0.972	G=0.028
1000Genomes	Europe	Sub	1006	A=0.928	G=0.072
1000Genomes	Global	Study-wide	5008	A=0.887	G=0.113
1000Genomes	South Asian	Sub	978	A=0.830	G=0.170
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.946	G=0.054
The Genome Aggregation Database	African	Sub	8724	A=0.814	G=0.186
The Genome Aggregation Database	American	Sub	838	A=0.960	G=0.040
The Genome Aggregation Database	East Asian	Sub	1622	A=0.980	G=0.020
The Genome Aggregation Database	Europe	Sub	18488	A=0.938	G=0.061
The Genome Aggregation Database	Global	Study-wide	29974	A=0.905	G=0.094
The Genome Aggregation Database	Other	Sub	302	A=0.930	G=0.070
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.869	G=0.130
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.943	G=0.057

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs13418009	0.00079	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
cg04235223	chr11:93583509	C11orf90	0.0392029604638612	7.4205e-11
cg16099599	chr11:93583650	C11orf90	0.0384037603286423	3.8288e-9
cg06022884	chr3:135968310	PCCB	-0.0182881948370476	3.9486e-9
cg14868747	chr11:44331978	ALX4	0.0194086403435347	4.7426e-9
cg25042239	chr6:43021668	CUL7	0.025677218080425	5.0972e-9
cg00945486	chr8:139890004	COL22A1	-0.0154780393719412	5.3553e-9

rs13418009