rs13432396

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0477 (14271/29874,GnomAD)
C==0442 (12897/29118,TOPMED)
A=0462 (2312/5008,1000G)
A=0468 (1802/3854,ALSPAC)
A=0443 (1644/3708,TWINSUK)
chr2:202604865 (GRCh38.p7) (2q33.2)
AD
GWASdb2
1   publication(s)
See rs on genome
15 Enhancers around
24 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.202604865C>A
GRCh37.p13 chr 2NC_000002.11:g.203469588C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.293A=0.707
1000GenomesAmericanSub694C=0.630A=0.370
1000GenomesEast AsianSub1008C=0.785A=0.215
1000GenomesEuropeSub1006C=0.552A=0.448
1000GenomesGlobalStudy-wide5008C=0.538A=0.462
1000GenomesSouth AsianSub978C=0.540A=0.460
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.532A=0.468
The Genome Aggregation DatabaseAfricanSub8692C=0.341A=0.659
The Genome Aggregation DatabaseAmericanSub836C=0.640A=0.360
The Genome Aggregation DatabaseEast AsianSub1616C=0.812A=0.188
The Genome Aggregation DatabaseEuropeSub18428C=0.576A=0.423
The Genome Aggregation DatabaseGlobalStudy-wide29874C=0.522A=0.477
The Genome Aggregation DatabaseOtherSub302C=0.530A=0.470
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.442A=0.557
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.557A=0.443
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs134323960.00087alcohol dependence20201924

eQTL of rs13432396 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs13432396 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr2203498656203498787E06729068
chr2203508511203508609E06738923
chr2203473100203473158E0693512
chr2203498656203498787E06929068
chr2203454140203454343E070-15245
chr2203498656203498787E07129068
chr2203512936203512978E07243348
chr2203453131203453984E074-15604
chr2203453131203453984E081-15604
chr2203498434203498478E08128846
chr2203498656203498787E08129068
chr2203502036203502076E08132448
chr2203505566203505661E08135978
chr2203511285203511325E08141697
chr2203511285203511325E08241697








Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr2203498791203501362E06729203
chr2203501399203501501E06731811
chr2203498791203501362E06829203
chr2203501399203501501E06831811
chr2203498791203501362E06929203
chr2203501399203501501E06931811
chr2203501525203501580E06931937
chr2203498791203501362E07029203
chr2203501399203501501E07031811
chr2203501525203501580E07031937
chr2203498791203501362E07129203
chr2203501399203501501E07131811
chr2203498791203501362E07229203
chr2203501399203501501E07231811
chr2203498791203501362E07329203
chr2203501399203501501E07331811
chr2203501525203501580E07331937
chr2203498791203501362E07429203
chr2203498791203501362E08129203
chr2203501399203501501E08131811
chr2203501525203501580E08131937
chr2203498791203501362E08229203
chr2203501399203501501E08231811
chr2203501525203501580E08231937