SNP Detail Info-rs1362182

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0232 (6962/29888,GnomAD)
G==0228 (6659/29118,TOPMED)
G==0192 (962/5008,1000G)
G==0310 (1194/3854,ALSPAC)
G==0313 (1160/3708,TWINSUK)

Position: chr7:34335941 (GRCh38.p7) (7p14.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 8 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 7	NC_000007.14:g.34335941G>A
GRCh37.p13 chr 7	NC_000007.13:g.34375553G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.101	A=0.899
1000Genomes	American	Sub	694	G=0.280	A=0.720
1000Genomes	East Asian	Sub	1008	G=0.028	A=0.972
1000Genomes	Europe	Sub	1006	G=0.298	A=0.702
1000Genomes	Global	Study-wide	5008	G=0.192	A=0.808
1000Genomes	South Asian	Sub	978	G=0.310	A=0.690
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.310	A=0.690
The Genome Aggregation Database	African	Sub	8718	G=0.118	A=0.882
The Genome Aggregation Database	American	Sub	836	G=0.270	A=0.730
The Genome Aggregation Database	East Asian	Sub	1616	G=0.021	A=0.979
The Genome Aggregation Database	Europe	Sub	18416	G=0.304	A=0.695
The Genome Aggregation Database	Global	Study-wide	29888	G=0.232	A=0.767
The Genome Aggregation Database	Other	Sub	302	G=0.250	A=0.750
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.228	A=0.771
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.313	A=0.687

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs1362182	0.000893	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr7	34360447	34361339	E069	-14214
chr7	34394348	34394425	E070	18795
chr7	34394672	34394785	E070	19119
chr7	34402297	34402571	E073	26744
chr7	34360447	34361339	E081	-14214
chr7	34401119	34402136	E081	25566
chr7	34402297	34402571	E081	26744
chr7	34401119	34402136	E082	25566

rs1362182