Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 16 | NC_000016.10:g.53877858G>A |
GRCh38.p7 chr 16 | NC_000016.10:g.53877858G>T |
GRCh37.p13 chr 16 | NC_000016.9:g.53911770G>A |
GRCh37.p13 chr 16 | NC_000016.9:g.53911770G>T |
FTO RefSeqGene | NG_012969.1:g.178896G>A |
FTO RefSeqGene | NG_012969.1:g.178896G>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
FTO transcript | NM_001080432.2:c. | N/A | Intron Variant |
FTO transcript variant X1 | XM_011523313.2:c. | N/A | Intron Variant |
FTO transcript variant X4 | XM_011523314.2:c. | N/A | Intron Variant |
FTO transcript variant X5 | XM_011523315.2:c. | N/A | Intron Variant |
FTO transcript variant X6 | XM_011523316.2:c. | N/A | Intron Variant |
FTO transcript variant X2 | XM_017023654.1:c. | N/A | Intron Variant |
FTO transcript variant X3 | XM_017023655.1:c. | N/A | Intron Variant |
FTO transcript variant X7 | XM_017023656.1:c. | N/A | Intron Variant |
FTO transcript variant X8 | XM_017023657.1:c. | N/A | Intron Variant |
FTO transcript variant X9 | XM_017023658.1:c. | N/A | Genic Downstream Transcript Variant |
FTO transcript variant X10 | XR_001751980.1:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.167 | T=0.833 |
1000Genomes | American | Sub | 694 | G=0.350 | T=0.650 |
1000Genomes | East Asian | Sub | 1008 | G=0.148 | T=0.852 |
1000Genomes | Europe | Sub | 1006 | G=0.553 | T=0.447 |
1000Genomes | Global | Study-wide | 5008 | G=0.337 | T=0.663 |
1000Genomes | South Asian | Sub | 978 | G=0.530 | T=0.470 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.530 | T=0.470 |
The Genome Aggregation Database | African | Sub | 8698 | G=0.234 | T=0.766 |
The Genome Aggregation Database | American | Sub | 838 | G=0.330 | T=0.670 |
The Genome Aggregation Database | East Asian | Sub | 1610 | G=0.138 | T=0.862 |
The Genome Aggregation Database | Europe | Sub | 18418 | G=0.537 | T=0.462 |
The Genome Aggregation Database | Global | Study-wide | 29864 | G=0.423 | T=0.576 |
The Genome Aggregation Database | Other | Sub | 300 | G=0.720 | T=0.280 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.408 | T=0.591 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.549 | T=0.451 |
PMID | Title | Author | Journal |
---|---|---|---|
21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs1362571 | 0.000762 | alcohol dependence | 21314694 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr16 | 12004064 | 12004412 | E067 | -44415 |
chr16 | 12004528 | 12004642 | E067 | -44185 |
chr16 | 12004736 | 12004822 | E067 | -44005 |
chr16 | 12004836 | 12004880 | E067 | -43947 |
chr16 | 12005102 | 12005191 | E067 | -43636 |
chr16 | 12006644 | 12006705 | E067 | -42122 |
chr16 | 12006765 | 12006893 | E067 | -41934 |
chr16 | 12006938 | 12007047 | E067 | -41780 |
chr16 | 12058525 | 12058625 | E067 | 9698 |
chr16 | 12058826 | 12058911 | E067 | 9999 |
chr16 | 12058940 | 12059036 | E067 | 10113 |
chr16 | 12059038 | 12059287 | E067 | 10211 |
chr16 | 12069286 | 12069422 | E067 | 20459 |
chr16 | 12072114 | 12072454 | E067 | 23287 |
chr16 | 12080093 | 12080267 | E067 | 31266 |
chr16 | 12083983 | 12084203 | E067 | 35156 |
chr16 | 12084578 | 12085168 | E067 | 35751 |
chr16 | 12088042 | 12088919 | E067 | 39215 |
chr16 | 12094637 | 12094909 | E067 | 45810 |
chr16 | 12004064 | 12004412 | E068 | -44415 |
chr16 | 12004528 | 12004642 | E068 | -44185 |
chr16 | 12004736 | 12004822 | E068 | -44005 |
chr16 | 12004836 | 12004880 | E068 | -43947 |
chr16 | 12005102 | 12005191 | E068 | -43636 |
chr16 | 12006332 | 12006427 | E068 | -42400 |
chr16 | 12006457 | 12006519 | E068 | -42308 |
chr16 | 12006644 | 12006705 | E068 | -42122 |
chr16 | 12006765 | 12006893 | E068 | -41934 |
chr16 | 12006938 | 12007047 | E068 | -41780 |
chr16 | 12058525 | 12058625 | E068 | 9698 |
chr16 | 12058826 | 12058911 | E068 | 9999 |
chr16 | 12058940 | 12059036 | E068 | 10113 |
chr16 | 12059038 | 12059287 | E068 | 10211 |
chr16 | 12072114 | 12072454 | E068 | 23287 |
chr16 | 12072558 | 12072608 | E068 | 23731 |
chr16 | 12082591 | 12082672 | E068 | 33764 |
chr16 | 12082721 | 12082771 | E068 | 33894 |
chr16 | 12083135 | 12083260 | E068 | 34308 |
chr16 | 12083983 | 12084203 | E068 | 35156 |
chr16 | 12084578 | 12085168 | E068 | 35751 |
chr16 | 12088042 | 12088919 | E068 | 39215 |
chr16 | 12093948 | 12093998 | E068 | 45121 |
chr16 | 12094022 | 12094326 | E068 | 45195 |
chr16 | 12004064 | 12004412 | E069 | -44415 |
chr16 | 12004528 | 12004642 | E069 | -44185 |
chr16 | 12004736 | 12004822 | E069 | -44005 |
chr16 | 12004836 | 12004880 | E069 | -43947 |
chr16 | 12006938 | 12007047 | E069 | -41780 |
chr16 | 12058940 | 12059036 | E069 | 10113 |
chr16 | 12059038 | 12059287 | E069 | 10211 |
chr16 | 12072114 | 12072454 | E069 | 23287 |
chr16 | 12072558 | 12072608 | E069 | 23731 |
chr16 | 12082591 | 12082672 | E069 | 33764 |
chr16 | 12082721 | 12082771 | E069 | 33894 |
chr16 | 12083135 | 12083260 | E069 | 34308 |
chr16 | 12083983 | 12084203 | E069 | 35156 |
chr16 | 12084578 | 12085168 | E069 | 35751 |
chr16 | 12087577 | 12087617 | E069 | 38750 |
chr16 | 12088042 | 12088919 | E069 | 39215 |
chr16 | 12089150 | 12089200 | E069 | 40323 |
chr16 | 12089293 | 12089387 | E069 | 40466 |
chr16 | 12093948 | 12093998 | E069 | 45121 |
chr16 | 12094022 | 12094326 | E069 | 45195 |
chr16 | 12094637 | 12094909 | E069 | 45810 |
chr16 | 12006644 | 12006705 | E070 | -42122 |
chr16 | 12072114 | 12072454 | E070 | 23287 |
chr16 | 12073882 | 12073932 | E070 | 25055 |
chr16 | 12096290 | 12096906 | E070 | 47463 |
chr16 | 12004064 | 12004412 | E071 | -44415 |
chr16 | 12004528 | 12004642 | E071 | -44185 |
chr16 | 12004736 | 12004822 | E071 | -44005 |
chr16 | 12004836 | 12004880 | E071 | -43947 |
chr16 | 12006332 | 12006427 | E071 | -42400 |
chr16 | 12006457 | 12006519 | E071 | -42308 |
chr16 | 12006644 | 12006705 | E071 | -42122 |
chr16 | 12006765 | 12006893 | E071 | -41934 |
chr16 | 12006938 | 12007047 | E071 | -41780 |
chr16 | 12058525 | 12058625 | E071 | 9698 |
chr16 | 12058826 | 12058911 | E071 | 9999 |
chr16 | 12058940 | 12059036 | E071 | 10113 |
chr16 | 12059038 | 12059287 | E071 | 10211 |
chr16 | 12069286 | 12069422 | E071 | 20459 |
chr16 | 12072114 | 12072454 | E071 | 23287 |
chr16 | 12072558 | 12072608 | E071 | 23731 |
chr16 | 12082591 | 12082672 | E071 | 33764 |
chr16 | 12082721 | 12082771 | E071 | 33894 |
chr16 | 12083983 | 12084203 | E071 | 35156 |
chr16 | 12084578 | 12085168 | E071 | 35751 |
chr16 | 12085861 | 12085919 | E071 | 37034 |
chr16 | 12086195 | 12086354 | E071 | 37368 |
chr16 | 12086399 | 12086442 | E071 | 37572 |
chr16 | 12087123 | 12087295 | E071 | 38296 |
chr16 | 12087577 | 12087617 | E071 | 38750 |
chr16 | 12088042 | 12088919 | E071 | 39215 |
chr16 | 12089150 | 12089200 | E071 | 40323 |
chr16 | 12089293 | 12089387 | E071 | 40466 |
chr16 | 12089564 | 12089614 | E071 | 40737 |
chr16 | 12092560 | 12092645 | E071 | 43733 |
chr16 | 12092849 | 12092937 | E071 | 44022 |
chr16 | 12093074 | 12093124 | E071 | 44247 |
chr16 | 12093150 | 12093200 | E071 | 44323 |
chr16 | 12093948 | 12093998 | E071 | 45121 |
chr16 | 12094022 | 12094326 | E071 | 45195 |
chr16 | 12094637 | 12094909 | E071 | 45810 |
chr16 | 12096290 | 12096906 | E071 | 47463 |
chr16 | 12002947 | 12003216 | E072 | -45611 |
chr16 | 12003228 | 12003285 | E072 | -45542 |
chr16 | 12003389 | 12003447 | E072 | -45380 |
chr16 | 12003666 | 12003753 | E072 | -45074 |
chr16 | 12004064 | 12004412 | E072 | -44415 |
chr16 | 12004528 | 12004642 | E072 | -44185 |
chr16 | 12004736 | 12004822 | E072 | -44005 |
chr16 | 12004836 | 12004880 | E072 | -43947 |
chr16 | 12006644 | 12006705 | E072 | -42122 |
chr16 | 12006765 | 12006893 | E072 | -41934 |
chr16 | 12006938 | 12007047 | E072 | -41780 |
chr16 | 12058243 | 12058397 | E072 | 9416 |
chr16 | 12058525 | 12058625 | E072 | 9698 |
chr16 | 12058826 | 12058911 | E072 | 9999 |
chr16 | 12058940 | 12059036 | E072 | 10113 |
chr16 | 12059038 | 12059287 | E072 | 10211 |
chr16 | 12072114 | 12072454 | E072 | 23287 |
chr16 | 12072558 | 12072608 | E072 | 23731 |
chr16 | 12082591 | 12082672 | E072 | 33764 |
chr16 | 12082721 | 12082771 | E072 | 33894 |
chr16 | 12083983 | 12084203 | E072 | 35156 |
chr16 | 12084578 | 12085168 | E072 | 35751 |
chr16 | 12088042 | 12088919 | E072 | 39215 |
chr16 | 12089150 | 12089200 | E072 | 40323 |
chr16 | 12089293 | 12089387 | E072 | 40466 |
chr16 | 12090244 | 12090294 | E072 | 41417 |
chr16 | 12090445 | 12090505 | E072 | 41618 |
chr16 | 12093948 | 12093998 | E072 | 45121 |
chr16 | 12094022 | 12094326 | E072 | 45195 |
chr16 | 12001042 | 12001092 | E073 | -47735 |
chr16 | 12001096 | 12001161 | E073 | -47666 |
chr16 | 12001417 | 12001606 | E073 | -47221 |
chr16 | 12001635 | 12001757 | E073 | -47070 |
chr16 | 12004064 | 12004412 | E073 | -44415 |
chr16 | 12004528 | 12004642 | E073 | -44185 |
chr16 | 12004736 | 12004822 | E073 | -44005 |
chr16 | 12004836 | 12004880 | E073 | -43947 |
chr16 | 12005102 | 12005191 | E073 | -43636 |
chr16 | 12005224 | 12005321 | E073 | -43506 |
chr16 | 12006765 | 12006893 | E073 | -41934 |
chr16 | 12006938 | 12007047 | E073 | -41780 |
chr16 | 12069286 | 12069422 | E073 | 20459 |
chr16 | 12072114 | 12072454 | E073 | 23287 |
chr16 | 12072558 | 12072608 | E073 | 23731 |
chr16 | 12083582 | 12083687 | E073 | 34755 |
chr16 | 12083983 | 12084203 | E073 | 35156 |
chr16 | 12088042 | 12088919 | E073 | 39215 |
chr16 | 12093948 | 12093998 | E073 | 45121 |
chr16 | 12004528 | 12004642 | E074 | -44185 |
chr16 | 12004736 | 12004822 | E074 | -44005 |
chr16 | 12004836 | 12004880 | E074 | -43947 |
chr16 | 12006644 | 12006705 | E074 | -42122 |
chr16 | 12006765 | 12006893 | E074 | -41934 |
chr16 | 12006938 | 12007047 | E074 | -41780 |
chr16 | 12058525 | 12058625 | E074 | 9698 |
chr16 | 12058826 | 12058911 | E074 | 9999 |
chr16 | 12058940 | 12059036 | E074 | 10113 |
chr16 | 12059038 | 12059287 | E074 | 10211 |
chr16 | 12072114 | 12072454 | E074 | 23287 |
chr16 | 12072558 | 12072608 | E074 | 23731 |
chr16 | 12082591 | 12082672 | E074 | 33764 |
chr16 | 12082721 | 12082771 | E074 | 33894 |
chr16 | 12083135 | 12083260 | E074 | 34308 |
chr16 | 12083983 | 12084203 | E074 | 35156 |
chr16 | 12084578 | 12085168 | E074 | 35751 |
chr16 | 12085861 | 12085919 | E074 | 37034 |
chr16 | 12087577 | 12087617 | E074 | 38750 |
chr16 | 12088042 | 12088919 | E074 | 39215 |
chr16 | 12089150 | 12089200 | E074 | 40323 |
chr16 | 12089293 | 12089387 | E074 | 40466 |
chr16 | 12090244 | 12090294 | E074 | 41417 |
chr16 | 12090445 | 12090505 | E074 | 41618 |
chr16 | 12090826 | 12090969 | E074 | 41999 |
chr16 | 12090983 | 12091079 | E074 | 42156 |
chr16 | 12091157 | 12091237 | E074 | 42330 |
chr16 | 12093948 | 12093998 | E074 | 45121 |
chr16 | 12004836 | 12004880 | E081 | -43947 |
chr16 | 12006332 | 12006427 | E081 | -42400 |
chr16 | 12006457 | 12006519 | E081 | -42308 |
chr16 | 12006644 | 12006705 | E081 | -42122 |
chr16 | 12006765 | 12006893 | E081 | -41934 |
chr16 | 12006938 | 12007047 | E081 | -41780 |
chr16 | 12069286 | 12069422 | E081 | 20459 |
chr16 | 12072114 | 12072454 | E081 | 23287 |
chr16 | 12080093 | 12080267 | E081 | 31266 |
chr16 | 12096290 | 12096906 | E081 | 47463 |
chr16 | 12004736 | 12004822 | E082 | -44005 |
chr16 | 12004836 | 12004880 | E082 | -43947 |
chr16 | 12006332 | 12006427 | E082 | -42400 |
chr16 | 12006457 | 12006519 | E082 | -42308 |
chr16 | 12006644 | 12006705 | E082 | -42122 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr16 | 12007195 | 12011040 | E067 | -37787 |
chr16 | 12070061 | 12071981 | E067 | 21234 |
chr16 | 12007195 | 12011040 | E068 | -37787 |
chr16 | 12070061 | 12071981 | E068 | 21234 |
chr16 | 12007195 | 12011040 | E069 | -37787 |
chr16 | 12070061 | 12071981 | E069 | 21234 |
chr16 | 12007195 | 12011040 | E070 | -37787 |
chr16 | 12070061 | 12071981 | E070 | 21234 |
chr16 | 12007195 | 12011040 | E071 | -37787 |
chr16 | 12070061 | 12071981 | E071 | 21234 |
chr16 | 12007195 | 12011040 | E072 | -37787 |
chr16 | 12070061 | 12071981 | E072 | 21234 |
chr16 | 12007195 | 12011040 | E073 | -37787 |
chr16 | 12070061 | 12071981 | E073 | 21234 |
chr16 | 12007195 | 12011040 | E074 | -37787 |
chr16 | 12070061 | 12071981 | E074 | 21234 |
chr16 | 12007195 | 12011040 | E081 | -37787 |
chr16 | 12070061 | 12071981 | E081 | 21234 |
chr16 | 12007195 | 12011040 | E082 | -37787 |
chr16 | 12070061 | 12071981 | E082 | 21234 |