SNP Detail Info-rs1363204

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.167893080T>A
GRCh37.p13 chr 5	NC_000005.9:g.167320085T>A

Molecule type	Change	Amino acid[Codon]	SO Term
TENM2 transcript variant 2	NM_001080428.2:c.	N/A	Intron Variant
TENM2 transcript variant 1	NM_001122679.1:c.	N/A	Intron Variant
TENM2 transcript variant X3	XM_005265950.2:c.	N/A	Intron Variant
TENM2 transcript variant X4	XM_006714897.2:c.	N/A	Intron Variant
TENM2 transcript variant X6	XM_011534604.2:c.	N/A	Intron Variant
TENM2 transcript variant X1	XM_017009660.1:c.	N/A	Intron Variant
TENM2 transcript variant X2	XM_017009661.1:c.	N/A	Intron Variant
TENM2 transcript variant X5	XM_017009662.1:c.	N/A	Intron Variant
TENM2 transcript variant X7	XM_017009663.1:c.	N/A	Intron Variant
TENM2 transcript variant X8	XM_017009664.1:c.	N/A	Intron Variant
TENM2 transcript variant X9	XM_017009665.1:c.	N/A	Intron Variant
TENM2 transcript variant X10	XM_017009666.1:c.	N/A	Intron Variant
TENM2 transcript variant X11	XM_017009667.1:c.	N/A	Intron Variant
TENM2 transcript variant X12	XM_017009668.1:c.	N/A	Intron Variant
TENM2 transcript variant X13	XM_017009669.1:c.	N/A	Intron Variant
TENM2 transcript variant X14	XM_005265952.2:c.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.965	A=0.035
1000Genomes	American	Sub	694	T=0.790	A=0.210
1000Genomes	East Asian	Sub	1008	T=0.569	A=0.431
1000Genomes	Europe	Sub	1006	T=0.907	A=0.093
1000Genomes	Global	Study-wide	5008	T=0.823	A=0.177
1000Genomes	South Asian	Sub	978	T=0.830	A=0.170
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.894	A=0.106
The Genome Aggregation Database	African	Sub	8728	T=0.951	A=0.049
The Genome Aggregation Database	American	Sub	838	T=0.710	A=0.290
The Genome Aggregation Database	East Asian	Sub	1610	T=0.598	A=0.402
The Genome Aggregation Database	Europe	Sub	18484	T=0.897	A=0.102
The Genome Aggregation Database	Global	Study-wide	29962	T=0.891	A=0.108
The Genome Aggregation Database	Other	Sub	302	T=0.920	A=0.080
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.910	A=0.089
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.902	A=0.098

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs1363204	0.000989	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr5	167288262	167288421	E070	-31664
chr5	167288470	167289124	E070	-30961
chr5	167289178	167289288	E070	-30797
chr5	167289365	167289665	E070	-30420
chr5	167294427	167294561	E070	-25524
chr5	167288262	167288421	E071	-31664
chr5	167288262	167288421	E073	-31664
chr5	167345344	167346137	E073	25259
chr5	167288262	167288421	E081	-31664
chr5	167288470	167289124	E081	-30961
chr5	167289178	167289288	E081	-30797
chr5	167289365	167289665	E081	-30420
chr5	167291112	167291166	E081	-28919
chr5	167294427	167294561	E081	-25524
chr5	167323816	167324134	E081	3731
chr5	167324181	167324417	E081	4096
chr5	167326158	167326356	E081	6073
chr5	167326590	167326875	E081	6505
chr5	167339946	167340631	E081	19861
chr5	167342322	167342637	E081	22237
chr5	167343268	167343740	E081	23183
chr5	167343817	167344037	E081	23732
chr5	167345210	167345294	E081	25125
chr5	167345344	167346137	E081	25259
chr5	167346262	167346414	E081	26177
chr5	167346561	167346691	E081	26476
chr5	167288262	167288421	E082	-31664
chr5	167294427	167294561	E082	-25524
chr5	167323816	167324134	E082	3731
chr5	167339946	167340631	E082	19861
chr5	167345210	167345294	E082	25125
chr5	167345344	167346137	E082	25259
chr5	167346561	167346691	E082	26476
chr5	167360492	167360661	E082	40407

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr5	167361529	167361840	E068	41444
chr5	167361529	167361840	E072	41444
chr5	167361529	167361840	E073	41444

rs1363204