rs1370271

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0145 (4359/29906,GnomAD)
T==0182 (5321/29118,TOPMED)
T==0148 (739/5008,1000G)
T==0133 (512/3854,ALSPAC)
T==0126 (467/3708,TWINSUK)
chr20:55965963 (GRCh38.p7) (20q13.2)
AD
GWASdb2
1   publication(s)
See rs on genome
16 Enhancers around
50 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 20NC_000020.11:g.55965963T>C
GRCh37.p13 chr 20NC_000020.10:g.54541019T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.270C=0.730
1000GenomesAmericanSub694T=0.120C=0.880
1000GenomesEast AsianSub1008T=0.064C=0.936
1000GenomesEuropeSub1006T=0.122C=0.878
1000GenomesGlobalStudy-wide5008T=0.148C=0.852
1000GenomesSouth AsianSub978T=0.110C=0.890
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.133C=0.867
The Genome Aggregation DatabaseAfricanSub8690T=0.230C=0.770
The Genome Aggregation DatabaseAmericanSub838T=0.140C=0.860
The Genome Aggregation DatabaseEast AsianSub1616T=0.062C=0.938
The Genome Aggregation DatabaseEuropeSub18460T=0.114C=0.885
The Genome Aggregation DatabaseGlobalStudy-wide29906T=0.145C=0.854
The Genome Aggregation DatabaseOtherSub302T=0.090C=0.910
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.182C=0.817
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.126C=0.874
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs13702710.000658alcohol dependence21314694

eQTL of rs1370271 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1370271 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr205451026154510339E067-30680
chr205455254954552827E07011530
chr205455285654553905E07011837
chr205457154654571605E07030527
chr205457167254571767E07030653
chr205457192654571991E07030907
chr205455285654553905E07111837
chr205455254954552827E07211530
chr205455285654553905E07211837
chr205455241954552499E08111400
chr205455254954552827E08111530
chr205455285654553905E08111837
chr205455435954554447E08113340
chr205457621054576302E08135191
chr205457630354576719E08135284
chr205455285654553905E08211837






Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr205457757154577952E06736552
chr205457849354578543E06737474
chr205457855954578769E06737540
chr205457877254578842E06737753
chr205457889654579446E06737877
chr205457959154579650E06738572
chr205457969654579857E06738677
chr205457987854580015E06738859
chr205458002754580130E06739008
chr205458014154580420E06739122
chr205458045054580631E06739431
chr205458069654580781E06739677
chr205457889654579446E06837877
chr205457959154579650E06838572
chr205457969654579857E06838677
chr205457987854580015E06838859
chr205458002754580130E06839008
chr205458014154580420E06839122
chr205458045054580631E06839431
chr205458069654580781E06839677
chr205457849354578543E06937474
chr205457855954578769E06937540
chr205457877254578842E06937753
chr205457889654579446E06937877
chr205457959154579650E06938572
chr205457849354578543E07137474
chr205458014154580420E07139122
chr205458045054580631E07139431
chr205457757154577952E07236552
chr205457849354578543E07237474
chr205457855954578769E07237540
chr205457877254578842E07237753
chr205457889654579446E07237877
chr205457959154579650E07238572
chr205457969654579857E07238677
chr205457987854580015E07238859
chr205458002754580130E07239008
chr205458014154580420E07239122
chr205458045054580631E07239431
chr205457849354578543E07337474
chr205457855954578769E07337540
chr205457877254578842E07337753
chr205457889654579446E07337877
chr205457959154579650E07338572
chr205457969654579857E07338677
chr205457959154579650E08238572
chr205457969654579857E08238677
chr205457987854580015E08238859
chr205458045054580631E08239431
chr205458069654580781E08239677