rs1381471

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0465 (13875/29830,GnomAD)
C=0476 (13874/29118,TOPMED)
C=0467 (2337/5008,1000G)
T==0347 (1338/3854,ALSPAC)
T==0356 (1320/3708,TWINSUK)
chr2:170097896 (GRCh38.p7) (2q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
24 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.170097896T>C
GRCh37.p13 chr 2NC_000002.11:g.170954406T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.759C=0.241
1000GenomesAmericanSub694T=0.340C=0.660
1000GenomesEast AsianSub1008T=0.547C=0.453
1000GenomesEuropeSub1006T=0.365C=0.635
1000GenomesGlobalStudy-wide5008T=0.533C=0.467
1000GenomesSouth AsianSub978T=0.530C=0.470
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.347C=0.653
The Genome Aggregation DatabaseAfricanSub8700T=0.714C=0.286
The Genome Aggregation DatabaseAmericanSub830T=0.350C=0.650
The Genome Aggregation DatabaseEast AsianSub1608T=0.513C=0.487
The Genome Aggregation DatabaseEuropeSub18392T=0.349C=0.650
The Genome Aggregation DatabaseGlobalStudy-wide29830T=0.465C=0.534
The Genome Aggregation DatabaseOtherSub300T=0.410C=0.590
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.523C=0.476
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.356C=0.644
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs13814713.8E-05alcoholism (heaviness of drinking)21529783

eQTL of rs1381471 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1381471 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr2170929174170929334E067-25072
chr2170929632170930190E067-24216
chr2170945208170945626E067-8780
chr2170929632170930190E068-24216
chr2170945208170945626E068-8780
chr2170929632170930190E069-24216
chr2170945208170945626E069-8780
chr2170945208170945626E070-8780
chr2171001459171001512E07047053
chr2171003634171003827E07049228
chr2171003848171003942E07049442
chr2170929174170929334E071-25072
chr2170929632170930190E071-24216
chr2170945208170945626E071-8780
chr2170929632170930190E072-24216
chr2170945208170945626E074-8780
chr2170943412170943493E081-10913
chr2170943593170943864E081-10542
chr2170944019170944118E081-10288
chr2170945208170945626E081-8780
chr2170929632170930190E082-24216
chr2170943412170943493E082-10913
chr2170944019170944118E082-10288
chr2170945208170945626E082-8780