rs1389221

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0208 (6209/29816,GnomAD)
C=0199 (5820/29118,TOPMED)
C=0237 (1187/5008,1000G)
C=0154 (592/3854,ALSPAC)
C=0161 (598/3708,TWINSUK)
chr5:24884151 (GRCh38.p7) (5p14.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.24884151T>C
GRCh37.p13 chr 5NC_000005.9:g.24884260T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.754C=0.246
1000GenomesAmericanSub694T=0.840C=0.160
1000GenomesEast AsianSub1008T=0.691C=0.309
1000GenomesEuropeSub1006T=0.810C=0.190
1000GenomesGlobalStudy-wide5008T=0.763C=0.237
1000GenomesSouth AsianSub978T=0.750C=0.250
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.846C=0.154
The Genome Aggregation DatabaseAfricanSub8710T=0.758C=0.242
The Genome Aggregation DatabaseAmericanSub832T=0.870C=0.130
The Genome Aggregation DatabaseEast AsianSub1560T=0.702C=0.298
The Genome Aggregation DatabaseEuropeSub18412T=0.811C=0.188
The Genome Aggregation DatabaseGlobalStudy-wide29816T=0.791C=0.208
The Genome Aggregation DatabaseOtherSub302T=0.780C=0.220
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.800C=0.199
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.839C=0.161
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs13892216.3E-05alcoholism (heaviness of drinking)21529783

eQTL of rs1389221 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1389221 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.