rs1396554

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
A==0405 (12130/29900,GnomAD)
A==0407 (11852/29118,TOPMED)
A==0425 (2126/5008,1000G)
A==0412 (1588/3854,ALSPAC)
A==0416 (1543/3708,TWINSUK)
chr9:103583028 (GRCh38.p7) (9q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
24 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.103583028A>G
GRCh37.p13 chr 9NC_000009.11:g.106345310A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.402G=0.598
1000GenomesAmericanSub694A=0.290G=0.710
1000GenomesEast AsianSub1008A=0.403G=0.597
1000GenomesEuropeSub1006A=0.442G=0.558
1000GenomesGlobalStudy-wide5008A=0.425G=0.575
1000GenomesSouth AsianSub978A=0.560G=0.440
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.412G=0.588
The Genome Aggregation DatabaseAfricanSub8688A=0.399G=0.601
The Genome Aggregation DatabaseAmericanSub836A=0.280G=0.720
The Genome Aggregation DatabaseEast AsianSub1614A=0.344G=0.656
The Genome Aggregation DatabaseEuropeSub18460A=0.418G=0.581
The Genome Aggregation DatabaseGlobalStudy-wide29900A=0.405G=0.594
The Genome Aggregation DatabaseOtherSub302A=0.470G=0.530
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.407G=0.593
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.416G=0.584
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs13965549.8E-05alcoholism (heaviness of drinking)21529783

eQTL of rs1396554 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1396554 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr9106378460106379080E06733150
chr9106380151106380201E06734841
chr9106380406106380736E06735096
chr9106378460106379080E06833150
chr9106380406106380736E06835096
chr9106378460106379080E06933150
chr9106379405106380050E06934095
chr9106380151106380201E06934841
chr9106380406106380736E06935096
chr9106378460106379080E07133150
chr9106379086106379331E07133776
chr9106379405106380050E07134095
chr9106380151106380201E07134841
chr9106380406106380736E07135096
chr9106378460106379080E07233150
chr9106379086106379331E07233776
chr9106379405106380050E07234095
chr9106380151106380201E07234841
chr9106380406106380736E07235096
chr9106378460106379080E07433150
chr9106379086106379331E07433776
chr9106379405106380050E07434095
chr9106380151106380201E07434841
chr9106380406106380736E07435096