rs1401083

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0477 (14210/29784,GnomAD)
G=0491 (14305/29118,TOPMED)
A==0459 (2298/5008,1000G)
G=0394 (1517/3854,ALSPAC)
G=0390 (1446/3708,TWINSUK)
chr3:116654960 (GRCh38.p7) (3q13.31)
AD
GWASdb2
1   publication(s)
See rs on genome
28 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.116654960A>G
GRCh37.p13 chr 3NC_000003.11:g.116373807A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.412G=0.588
1000GenomesAmericanSub694A=0.460G=0.540
1000GenomesEast AsianSub1008A=0.307G=0.693
1000GenomesEuropeSub1006A=0.589G=0.411
1000GenomesGlobalStudy-wide5008A=0.459G=0.541
1000GenomesSouth AsianSub978A=0.550G=0.450
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.606G=0.394
The Genome Aggregation DatabaseAfricanSub8688A=0.437G=0.563
The Genome Aggregation DatabaseAmericanSub832A=0.420G=0.580
The Genome Aggregation DatabaseEast AsianSub1564A=0.262G=0.738
The Genome Aggregation DatabaseEuropeSub18400A=0.587G=0.412
The Genome Aggregation DatabaseGlobalStudy-wide29784A=0.522G=0.477
The Genome Aggregation DatabaseOtherSub300A=0.680G=0.320
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.508G=0.491
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.610G=0.390
PMID Title Author Journal
22072270Genome-wide association study identifies 5q21 and 9p24.1 (KDM4C) loci associated with alcohol withdrawal symptoms.Wang KSJ Neural Transm (Vienna)

P-Value

SNP ID p-value Traits Study
rs14010837.8E-05alcohol withdrawal symptoms22072270

eQTL of rs1401083 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1401083 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3116382620116382698E0678813
chr3116387731116387793E06713924
chr3116389966116390245E06716159
chr3116387731116387793E06813924
chr3116389966116390245E06816159
chr3116326172116326222E069-47585
chr3116326385116326454E069-47353
chr3116381954116382411E0698147
chr3116382499116382597E0698692
chr3116382620116382698E0698813
chr3116387731116387793E06913924
chr3116381954116382411E0718147
chr3116382499116382597E0718692
chr3116382620116382698E0718813
chr3116387731116387793E07113924
chr3116389966116390245E07116159
chr3116326172116326222E072-47585
chr3116326385116326454E072-47353
chr3116389966116390245E07216159
chr3116382499116382597E0738692
chr3116382620116382698E0738813
chr3116326172116326222E074-47585
chr3116326385116326454E074-47353
chr3116381954116382411E0748147
chr3116382499116382597E0748692
chr3116387731116387793E07413924
chr3116389966116390245E07416159
chr3116361847116362239E081-11568