rs1404170

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0101 (3014/29760,GnomAD)
C=0098 (2874/29118,TOPMED)
C=0069 (346/5008,1000G)
C=0127 (489/3854,ALSPAC)
C=0123 (456/3708,TWINSUK)
chr5:106069466 (GRCh38.p7) (5q21.3)
AD
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.106069466T>C
GRCh37.p13 chr 5NC_000005.9:g.105405167T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.926C=0.074
1000GenomesAmericanSub694T=0.930C=0.070
1000GenomesEast AsianSub1008T=0.990C=0.010
1000GenomesEuropeSub1006T=0.892C=0.108
1000GenomesGlobalStudy-wide5008T=0.931C=0.069
1000GenomesSouth AsianSub978T=0.920C=0.080
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.873C=0.127
The Genome Aggregation DatabaseAfricanSub8722T=0.917C=0.083
The Genome Aggregation DatabaseAmericanSub812T=0.940C=0.060
The Genome Aggregation DatabaseEast AsianSub1614T=0.987C=0.013
The Genome Aggregation DatabaseEuropeSub18310T=0.881C=0.118
The Genome Aggregation DatabaseGlobalStudy-wide29760T=0.898C=0.101
The Genome Aggregation DatabaseOtherSub302T=0.830C=0.170
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.901C=0.098
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.877C=0.123
PMID Title Author Journal
19581569Genome-wide association study of alcohol dependence.Treutlein JArch Gen Psychiatry

P-Value

SNP ID p-value Traits Study
rs14041707.92E-05alcohol dependence19581569

eQTL of rs1404170 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1404170 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr5105428949105429126E07023782
chr5105429166105429265E07023999
chr5105429867105430150E07024700