SNP Detail Info-rs1414298

Organism: Homo sapiens

Alleles: T>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T==0337 (6928/20558,GnomAD)
T==0337 (1274/3775,1000G)
T==0258 (958/3708,TWINSUK)
T==0254 (734/2889,ALSPAC)

Position: chrX:98279846 (GRCh38.p7) (Xq21.33)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr X	NC_000023.11:g.98279846T>C
GRCh37.p13 chr X	NC_000023.10:g.97534844T>C

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1003	T=0.697	C=0.303
1000Genomes	American	Sub	524	T=0.220	C=0.780
1000Genomes	East Asian	Sub	764	T=0.120	C=0.880
1000Genomes	Europe	Sub	766	T=0.290	C=0.710
1000Genomes	Global	Study-wide	3775	T=0.337	C=0.663
1000Genomes	South Asian	Sub	718	T=0.210	C=0.790
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	2889	T=0.254	C=0.746
The Genome Aggregation Database	African	Sub	5768	T=0.657	C=0.343
The Genome Aggregation Database	American	Sub	613	T=0.170	C=0.830
The Genome Aggregation Database	East Asian	Sub	1003	T=0.129	C=0.871
The Genome Aggregation Database	Europe	Sub	12989	T=0.220	C=0.779
The Genome Aggregation Database	Global	Study-wide	20558	T=0.337	C=0.663
The Genome Aggregation Database	Other	Sub	185	T=0.260	C=0.740
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.258	C=0.742

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs1414298	0.000823	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1414298